CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0235300

Gene name
Homology with Arabidopsis Similar to At5g41440: zinc finger (C3HC4-type RING finger) family protein (HF=8e+0)

Module size 6 genes

NF 0.38

%ile 45.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os01g0235300 AK059862.1 - SOUL heme-binding protein family protein 8e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.60 79.7 0.94 Os09g0293400 AK059627.1 - Ubiquitin-conjugating enzyme E2 1e-10 At5g56150 UBC30 (ubiquitin-conjugating enzyme 30) O.I. H.G. S.X.
0.33 38.8 0.95 Os04g0498200 AB047923.1 - Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein) 3e-10 At5g57815 cytochrome c oxidase subunit 6b, putative O.I. H.G. S.X.
0.29 31.1 0.94 Os01g0799900 AK072822.1 - Latex-abundant protein 9e-4 At5g04200 AtMC9 (metacaspase 9) O.I. H.G. S.X.
0.27 27.5 0.95 Os09g0510000 AK121614.1 - Molluscan rhodopsin C-terminal tail family protein 1e+0 At1g02610 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.26 25.6 0.94 Os07g0647500 NM_185919.1 - Conserved hypothetical protein 3e+0 At5g07950 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.7 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.5 99.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.3 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.047 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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