CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0231600

Gene name
Homology with Arabidopsis Similar to At4g32780: phosphoinositide binding (HF=7e-7)

Module size 12 genes

NF 0.34

%ile 38.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.96 Os01g0231600 9629.m01278 - - 7e-7 At4g32780 phosphoinositide binding O.I. H.G. S.X.
0.67 87.2 0.98 Os09g0526300 AB101649.1 - OCL3 protein 9e-13 At4g00730 ANL2 (ANTHOCYANINLESS 2) O.I. H.G. S.X.
0.46 60.9 0.98 Os04g0117700 9640.m04160 - - 9e-2 At5g10140 FLC (FLOWERING LOCUS C) O.I. H.G. S.X.
0.40 51.1 0.98 Os08g0172100 9636.m00691 - - 9e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.39 48.3 0.98 Os07g0192800 9635.m00913 - AAA ATPase, central region domain containingprotein 5e-3 At4g21620 glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.98 Os11g0442200 9639.m02271 - - 4e-1 At3g54290 - O.I. H.G. S.X.
0.34 40.0 0.97 Os10g0153800 NM_194912.1 - - 2e-1 At2g02440 unknown protein O.I. H.G. S.X.
0.32 36.3 0.98 Os10g0473200 AK105229.1 - Conserved hypothetical protein 5e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.29 31.1 0.98 Os10g0486700 NM_197087.1 - - 3e+0 At3g26790 FUS3 (FUSCA 3) O.I. H.G. S.X.
0.27 27.5 0.99 Os08g0426100 9636.m03304 - - 2e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.24 22.4 0.98 Os03g0555100 NM_184734.1 - - 4e+0 At2g48100 exonuclease family protein O.I. H.G. S.X.
0.10 5.7 0.98 Os10g0191700 9638.m01034 - - 5e-1 At2g41420 proline-rich family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.7 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.8 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.4 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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