CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0230800

Gene name
Homology with Arabidopsis Similar to At2g19070: SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) (HF=2e+0)

Module size 9 genes

NF 0.79

%ile 97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 0.97 Os01g0230800 NM_188614.1 - Hypothetical protein 2e+0 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) O.I. H.G. S.X.
0.89 96.9 0.96 Os11g0680400 9639.m04228 - - 7e+0 At5g07550 GRP19 (GLYCINE-RICH PROTEIN 19) O.I. H.G. S.X.
0.89 96.9 0.97 Os09g0395000 9637.m01974 - - 1e+1 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) O.I. H.G. S.X.
0.88 96.8 0.97 Os09g0340700 9637.m01448 - - 1e-1 At2g30370 allergen-related O.I. H.G. S.X.
0.80 94.6 0.97 Os10g0367600 NM_196087.1 - - 6e-1 At5g26660 ATMYB86 (MYB DOMAIN PROTEIN 86) O.I. H.G. S.X.
0.74 91.4 0.97 Os12g0456300 9640.m02601 - - 3e+0 At5g57920 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.67 87.2 0.98 Os07g0219700 XM_354150.1 - - 7e-1 At4g18860 unknown protein O.I. H.G. S.X.
0.64 83.4 0.97 Os06g0330400 9634.m02205 - Sterol desaturase family protein 1e-1 At1g14290 SBH2 (SPHINGOID BASE HYDROXYLASE 2) O.I. H.G. S.X.
0.61 81.2 0.97 Os01g0238300 NM_188690.1 - - 2e-1 At5g45280 pectinacetylesterase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.0 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM240995 Zhonghua11 7 DAF, biological replicate 2 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
9.0 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM240996 Zhonghua11 7 DAF, biological replicate 3 GSE9498 Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage
8.8 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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