CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0201700

Gene name
Homology with Arabidopsis Similar to At4g18960: AG (AGAMOUS) (HF=2e-10)

Module size 8 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.84 Os01g0201700 AY553724.1 - MADS box protein 2e-10 At4g18960 AG (AGAMOUS) O.I. H.G. S.X.
0.55 73.7 0.87 Os01g0212500 AK120776.1 - Conserved hypothetical protein 2e-1 At2g35960 NHL12 O.I. H.G. S.X.
0.48 63.7 0.83 Os03g0596400 AK107535.1 - Protein of unknown function XH domain containingprotein 4e-1 At3g54826 - O.I. H.G. S.X.
0.47 62.3 0.85 Os06g0602400 AK106474.1 - ATP-dependent RNA helicase-like protein 2e-8 At3g58510 DEAD box RNA helicase, putative (RH11) O.I. H.G. S.X.
0.44 58.1 0.83 Os07g0507500 AK100690.1 - Hypothetical protein 3e-1 At2g01080 - O.I. H.G. S.X.
0.43 55.4 0.90 Os02g0753900 9630.m05091 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.40 51.1 0.87 Os03g0213600 AK100407.1 - Hypothetical protein 3e-2 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.40 51.1 0.89 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.9 97.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.5 96.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.6 96.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.2 96.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig11029_at, orthologous to the query gene, Os01g0201700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.33 42.6 Contig11029_at At4g18960 - - 2e-10 At2g42830 SHP2 (SHATTERPROOF 2) O.I. H.G. S.X.
0.77 90.8 Contig9944_s_at At4g18960 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) O.I. H.G. S.X.
0.35 45.1 HV10J10u_at At4g18960 - - 2e-4 At2g24200 cytosol aminopeptidase O.I. H.G. S.X.
0.33 42.6 Contig5399_at At4g18960 - - 4e-27 At2g20860 LIP1 (LIPOIC ACID SYNTHASE 1) O.I. H.G. S.X.
0.27 32.1 Contig10432_at At4g18960 - - 2e-29 At3g60750 transketolase, putative O.I. H.G. S.X.
0.18 18.2 Contig12269_s_at At4g18960 - - 8e-10 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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