CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0198900

Gene name
Homology with Arabidopsis Similar to At2g35960: NHL12 (HF=1e-1)

Module size 7 genes

NF 0.24

%ile 23.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.92 Os01g0198900 AK069974.1 - Conserved hypothetical protein 1e-1 At2g35960 NHL12 O.I. H.G. S.X.
0.47 62.3 0.94 Os06g0254300 AK066241.1 - Caleosin related family protein 8e-3 At1g23240 caleosin-related family protein O.I. H.G. S.X.
0.38 46.9 0.93 Os07g0601000 AK067272.1 - NADPH HC toxin reductase (Fragment) 6e-1 At5g44610 MAP18 (Microtubule-associated Protein 18) O.I. H.G. S.X.
0.30 32.7 0.94 Os02g0499000 CF333548 - Pathogenesis-related transcriptional factor andERF domain containing protein 1e-20 At4g13040 AP2 domain-containing transcription factor family protein O.I. H.G. S.X.
0.21 17.9 0.94 Os10g0530400 AK105926.1 - Glutathione-S-transferase Cla47 1e-1 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.19 15.1 0.95 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) O.I. H.G. S.X.
0.10 5.7 0.93 Os02g0593500 AK067498.1 - - 6e-18 At3g26570 PHT2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.3 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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