CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0192300

Gene name
Homology with Arabidopsis Similar to At3g16350: myb family transcription factor (HF=6e-2)

Module size 6 genes

NF 0.18

%ile 15.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.83 Os01g0192300 AK062458.1 - I-box binding factor (Fragment) 6e-2 At3g16350 myb family transcription factor O.I. H.G. S.X.
0.30 32.7 0.84 Os03g0161500 AK059911.1 - Conserved hypothetical protein 2e+0 At2g21400 SRS3 (SHI-RELATED SEQUENCE3) O.I. H.G. S.X.
0.26 25.6 0.84 Os09g0572400 CB629670 - ATP-binding cassette, sub-family F, member 2 (Ironinhibited ABC transporter 2) (HUSSY-18) 8e-9 At5g60790 ATGCN1 O.I. H.G. S.X.
0.15 10.3 0.86 Os01g0151600 AK063435.1 - Conserved hypothetical protein 9e-10 At5g59960 unknown protein O.I. H.G. S.X.
0.11 6.5 0.83 Os07g0684800 AK073876.1 - GRAB2 protein 1e-21 At5g18270 ANAC087 O.I. H.G. S.X.
0.08 4.2 0.82 Os03g0324900 AK068144.1 - Zn-finger, RING domain containing protein 2e-1 At2g35658 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.9 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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