Co-expression analysis

Gene ID Os01g0172800
Gene name
Homology with ArabidopsisSimilar to At1g28395: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.23
%ile 22.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.61Os01g0172800CA765179--1e+0At1g28395unknown proteinO.I.H.G.S.X.
0.5068.00.74Os11g0691100AF353091.2-Protein kinase domain containing protein4e-3At3g25490wall-associated kinase, putativeO.I.H.G.S.X.
0.4051.10.65Os02g0765600NM_193986.1-Alpha-amylase precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B)1e+1At4g15790unknown proteinO.I.H.G.S.X.
0.3541.70.65Os04g0107700AK110974.1-Peptidase C1A, papain family protein3e-3At3g19400cysteine proteinase, putativeO.I.H.G.S.X.
0.1712.60.66Os04g01962009632.m01071-O-methyltransferase, family 2 domain containingprotein1e-1At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)O.I.H.G.S.X.
0.063.00.70Os11g0439600AK069955.1-Nod factor binding lectin-nucleotidephosphohydrolase2e-1At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.899.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.198.5GSM275412Azucena root tip Buckled at the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
10.498.1GSM431928Root- -Fe+P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
9.798.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM275406Azucena root tip_At the wax layer_rep2GSE10857Gene expression of rice root tips before, at and buckled by a hard layer in two rice varietiesLink to GEO
9.397.9GSM431927Root- -Fe+P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
9.197.9GSM116399Seedling_IAA treated_rep1GSE5167Rice seedling hormone treatmentLink to GEO
8.797.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0006527The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.Link to AmiGO
0.2221GO:0006879Any process involved in the maintenance of an internal equilibrium of iron ions at the level of a cell.Link to AmiGO
0.1821GO:0008295The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, HI05D24u_at, orthologous to the query gene, Os01g0172800

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.7HI05D24u_atAt1g28395--5e+0At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.5066.9Contig4391_atAt1g28395--1e-1At4g35120kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.4053.1Contig3746_atAt1g28395--1e-1At4g18335unknown proteinO.I.H.G.S.X.
0.3647.1EBro01_SQ004_M15_atAt1g28395--1e+0At3g01530AtMYB57 (myb domain protein 57)O.I.H.G.S.X.
0.2326.1HVSMEg0015B10r2_atAt1g28395--3e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.1919.6Contig48_atAt1g28395--6e-125At1g56190phosphoglycerate kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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