CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0162800

Gene name
Homology with Arabidopsis Similar to At3g12545: lipid transfer protein-related (HF=1e-1)

Module size 17 genes

NF 0.86

%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 87.5 0.96 Os01g0162800 9629.m00619 - Leucine-rich repeat, typical subtype containingprotein 1e-1 At3g12545 lipid transfer protein-related O.I. H.G. S.X.
0.94 99.4 0.98 Os01g0967500 9629.m07296 - - 9e-1 At3g47510 unknown protein O.I. H.G. S.X.
0.94 99.4 0.98 Os04g0213550 9632.m01232 - - 6e-1 At1g54060 ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1) O.I. H.G. S.X.
0.94 99.4 0.98 Os07g0414400 9635.m02202 - - 2e+0 At3g06420 ATG8H (autophagy 8h) O.I. H.G. S.X.
0.94 99.4 0.98 Os11g0607800 9639.m03596 - - 5e+0 At1g27290 unknown protein O.I. H.G. S.X.
0.91 98.9 0.98 Os03g0451200 9631.m03326 - - 8e-1 At3g42628 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related O.I. H.G. S.X.
0.91 98.9 0.98 Os06g0243300 9634.m01340 - - 7e+0 At5g57790 unknown protein O.I. H.G. S.X.
0.88 96.8 0.97 Os04g0375600 9632.m02911 - - 1e+0 At3g44800 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.88 96.8 0.98 Os11g0212000 9639.m01003 - Disease resistance protein family protein 4e-1 At4g00070 - O.I. H.G. S.X.
0.86 96.4 0.97 Os07g0649600 9635.m04575 - Conserved hypothetical protein 7e-5 At4g39580 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.84 96.0 0.97 Os09g0565000 CR292669 - - 3e+0 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) O.I. H.G. S.X.
0.81 94.8 0.98 Os02g0224250 9630.m01204 - - 2e+0 At3g27740 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) O.I. H.G. S.X.
0.81 94.8 0.98 Os06g0342900 9634.m02318 - - 4e+0 At4g15000 60S ribosomal protein L27 (RPL27C) O.I. H.G. S.X.
0.81 94.8 0.97 Os06g0243400 9634.m01342 - - 6e-1 At2g19730 60S ribosomal protein L28 (RPL28A) O.I. H.G. S.X.
0.81 94.8 0.98 Os05g0172700 9636.m02641 - - 2e+0 At5g13330 Rap2.6L (related to AP2 6L) O.I. H.G. S.X.
0.74 91.4 0.98 Os07g0527900 9635.m03396 - Conserved hypothetical protein 4e-2 At4g29280 LCR22 (Low-molecular-weight cysteine-rich 22) O.I. H.G. S.X.
0.67 87.2 0.97 Os12g0505200 9640.m03094 - - 3e-1 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.68	87.5	0.96	Os01g0162800	9629.m00619	-	Leucine-rich repeat, typical subtype containingprotein	1e-1	At3g12545	lipid transfer protein-related	O.I.	H.G.	S.X.
0.94	99.4	0.98	Os01g0967500	9629.m07296	-	-	9e-1	At3g47510	unknown protein	O.I.	H.G.	S.X.
0.94	99.4	0.98	Os04g0213550	9632.m01232	-	-	6e-1	At1g54060	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	O.I.	H.G.	S.X.
0.94	99.4	0.98	Os07g0414400	9635.m02202	-	-	2e+0	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.
0.94	99.4	0.98	Os11g0607800	9639.m03596	-	-	5e+0	At1g27290	unknown protein	O.I.	H.G.	S.X.
0.91	98.9	0.98	Os03g0451200	9631.m03326	-	-	8e-1	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	O.I.	H.G.	S.X.
0.91	98.9	0.98	Os06g0243300	9634.m01340	-	-	7e+0	At5g57790	unknown protein	O.I.	H.G.	S.X.
0.88	96.8	0.97	Os04g0375600	9632.m02911	-	-	1e+0	At3g44800	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.88	96.8	0.98	Os11g0212000	9639.m01003	-	Disease resistance protein family protein	4e-1	At4g00070	-	O.I.	H.G.	S.X.
0.86	96.4	0.97	Os07g0649600	9635.m04575	-	Conserved hypothetical protein	7e-5	At4g39580	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.84	96.0	0.97	Os09g0565000	CR292669	-	-	3e+0	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.
0.81	94.8	0.98	Os02g0224250	9630.m01204	-	-	2e+0	At3g27740	CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)	O.I.	H.G.	S.X.
0.81	94.8	0.98	Os06g0342900	9634.m02318	-	-	4e+0	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.
0.81	94.8	0.97	Os06g0243400	9634.m01342	-	-	6e-1	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.
0.81	94.8	0.98	Os05g0172700	9636.m02641	-	-	2e+0	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.
0.74	91.4	0.98	Os07g0527900	9635.m03396	-	Conserved hypothetical protein	4e-2	At4g29280	LCR22 (Low-molecular-weight cysteine-rich 22)	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os12g0505200	9640.m03094	-	-	3e-1	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
88.8 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
79.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
88.8	100.0	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
79.1	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.7	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0162800
Gene name
Homology with Arabidopsis	Similar to At3g12545: lipid transfer protein-related (HF=1e-1)
Module size	17 genes
NF	0.86
%ile	99.3

Co-expression analysis

Gene ID Os01g0162800 Gene name Homology with ArabidopsisSimilar to At3g12545: lipid transfer protein-related (HF=1e-1) Module size 17 genes NF 0.86 %ile 99.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0162800

Gene name
Homology with Arabidopsis Similar to At3g12545: lipid transfer protein-related (HF=1e-1)

Module size 17 genes

NF 0.86

%ile 99.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays