CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0160800

Gene name
Homology with Arabidopsis Similar to At2g43570: chitinase, putative (HF=7e-1)

Module size 6 genes

NF 0.20

%ile 17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.70 Os01g0160800 AB051108.1 - Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase) 7e-1 At2g43570 chitinase, putative O.I. H.G. S.X.
0.80 94.6 0.73 Os12g0518200 AK070844.1 - Protein of unknown function DUF6 domain containingprotein 3e+0 At4g26290 unknown protein O.I. H.G. S.X.
0.50 68.0 0.77 Os01g0963000 AK109480.1 - Peroxidase BP 1 precursor 6e-1 At5g40150 peroxidase, putative O.I. H.G. S.X.
0.40 51.1 0.71 Os04g0618700 AK120799.1 - Protein kinase domain containing protein 2e+0 At3g56210 binding O.I. H.G. S.X.
0.08 4.2 0.70 Os02g0605900 AK064754.1 - Chitinase (EC 3.2.1.14) A 5e-1 At3g54420 ATEP3 O.I. H.G. S.X.
0.07 3.7 0.65 Os11g0229500 AB019240.2 - - 2e+0 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
36.1 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
11.4 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.105 1 GO:0006032 The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
0.105 1 GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
0.091 1 GO:0017148 Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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