CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0158500

Gene name
Homology with Arabidopsis Similar to At4g26300: emb1027 (embryo defective 1027) (HF=7e-17)

Module size 7 genes

NF 0.26

%ile 25.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.31 34.5 0.67 Os01g0158500 NM_184454.1 - Arginyl-tRNA synthetase, class Ic family protein 7e-17 At4g26300 emb1027 (embryo defective 1027) O.I. H.G. S.X.
0.40 51.1 0.84 Os01g0656400 9629.m04484 - WRKY transcription factor 15 8e-3 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) O.I. H.G. S.X.
0.35 41.7 0.80 Os05g0546400 AK109087.1 - Conserved hypothetical protein 1e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.33 38.8 0.80 Os04g0128700 AK107172.1 - Conserved hypothetical protein 2e-1 At1g19950 HVA22H (HVA22-LIKE PROTEIN H (ATHVA22H)) O.I. H.G. S.X.
0.25 24.1 0.87 Os04g0586500 AK106447.1 - Conserved hypothetical protein 4e+0 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.13 8.2 0.80 Os12g0164600 9640.m00602 - Protein of unknown function DUF793 family protein 1e+1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.12 7.2 0.78 Os04g0395800 AK107750.1 - ZIM domain containing protein 2e-3 At5g11930 glutaredoxin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.9 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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