CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0151700

Gene name
Homology with Arabidopsis Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-2)

Module size 6 genes

NF 0.31

%ile 33.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.84 Os01g0151700 AK099949.1 - Short-chain dehydrogenase Tic32 5e-2 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 94.6 0.85 Os08g0269700 AK063209.1 - Conserved hypothetical protein 4e-1 At1g78620 integral membrane family protein O.I. H.G. S.X.
0.32 36.3 0.86 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.26 25.6 0.87 Os08g0269500 AK062738.1 - Conserved hypothetical protein 5e+0 At5g06250 transcription factor O.I. H.G. S.X.
0.17 12.6 0.86 Os03g0323900 AK108122.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 12.6 0.86 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.9 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.4018.1.S1_at, orthologous to the query gene, Os01g0151700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 Ta.4018.1.S1_at At2g37540 - - 7e-4 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 92.2 Ta.12323.1.A1_at At2g37540 - - 6e+0 Atcg00050 - O.I. H.G. S.X.
0.67 86.3 Ta.28109.1.A1_at At2g37540 - - 8e-2 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.47 67.9 TaAffx.64816.1.A1_at At2g37540 - - 4e+0 At2g33800 ribosomal protein S5 family protein O.I. H.G. S.X.
0.20 24.0 Ta.7871.3.S1_a_at At2g37540 - - 7e-1 At1g70470 unknown protein O.I. H.G. S.X.
0.18 21.0 AFFX-Tae-r2-Bs-lys-5_at At2g37540 - - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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