CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0151700

Gene name
Homology with Arabidopsis Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-2)

Module size 6 genes

NF 0.31

%ile 33.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.84 Os01g0151700 AK099949.1 - Short-chain dehydrogenase Tic32 5e-2 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.80 94.6 0.85 Os08g0269700 AK063209.1 - Conserved hypothetical protein 4e-1 At1g78620 integral membrane family protein O.I. H.G. S.X.
0.32 36.3 0.86 Os05g0244500 AK064349.1 - Glycoside hydrolase, family 5 protein 4e+0 At2g42820 HVA22F (HVA22-LIKE PROTEIN F) O.I. H.G. S.X.
0.26 25.6 0.87 Os08g0269500 AK062738.1 - Conserved hypothetical protein 5e+0 At5g06250 transcription factor O.I. H.G. S.X.
0.17 12.6 0.86 Os03g0323900 AK108122.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e-1 At1g04445 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.17 12.6 0.86 Os01g0857600 CB965854 - Conserved hypothetical protein 8e-2 At4g17480 palmitoyl protein thioesterase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.6	0.84	Os01g0151700	AK099949.1	-	Short-chain dehydrogenase Tic32	5e-2	At2g37540	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.80	94.6	0.85	Os08g0269700	AK063209.1	-	Conserved hypothetical protein	4e-1	At1g78620	integral membrane family protein	O.I.	H.G.	S.X.
0.32	36.3	0.86	Os05g0244500	AK064349.1	-	Glycoside hydrolase, family 5 protein	4e+0	At2g42820	HVA22F (HVA22-LIKE PROTEIN F)	O.I.	H.G.	S.X.
0.26	25.6	0.87	Os08g0269500	AK062738.1	-	Conserved hypothetical protein	5e+0	At5g06250	transcription factor	O.I.	H.G.	S.X.
0.17	12.6	0.86	Os03g0323900	AK108122.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	1e-1	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.17	12.6	0.86	Os01g0857600	CB965854	-	Conserved hypothetical protein	8e-2	At4g17480	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.9 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.9 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
21.9	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.6	98.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.9	98.1	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9	98.1	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37540, orthologous to the query gene, Os01g0151700

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.84 91.9 At2g37540 818330 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. H.G. S.X.
0.96 97.3 At2g32620 817822 ATCSLB02 encodes a gene similar to cellulose synthase O.I. H.G. S.X.
0.94 96.7 At2g32610 817821 ATCSLB01 encodes a gene similar to cellulose synthase O.I. H.G. S.X.
0.92 96.0 At1g47600 841169 BGLU34 (BETA GLUCOSIDASE 34) Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change. O.I. H.G. S.X.
0.92 96.0 At4g15300 827196 CYP702A2 a member of the cytochrome P450 gene family. molecular function unknown. O.I. H.G. S.X.
0.92 96.0 At3g20160 821560 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV O.I. H.G. S.X.
0.91 95.6 At1g06090 837118 fatty acid desaturase family protein F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV O.I. H.G. S.X.
0.91 95.6 At4g15360 827202 CYP705A3 member of CYP705A O.I. H.G. S.X.
0.91 95.6 At4g22640 828360 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. H.G. S.X.
0.91 95.6 At2g37700 818347 catalytic/ iron ion binding / oxidoreductase F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV O.I. H.G. S.X.
0.90 95.1 At5g58784 835994 dehydrodolichyl diphosphate synthase F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP O.I. H.G. S.X.
0.89 94.6 At3g06460 819823 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV O.I. H.G. S.X.
0.89 94.6 At3g47400 823894 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA O.I. H.G. S.X.
0.89 94.6 At3g49190 824080 condensation domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF O.I. H.G. S.X.
0.88 94.0 At5g16230 831483 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM O.I. H.G. S.X.
0.88 94.0 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM O.I. H.G. S.X.
0.88 94.0 At4g15370 827203 BARS1 (BARUOL SYNTHASE 1) Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings. O.I. H.G. S.X.
0.87 93.5 At1g47620 841171 CYP96A8 member of CYP96A O.I. H.G. S.X.
0.87 93.5 At1g66030 842916 CYP96A14P encodes a protein with cytochrome P450 domain O.I. H.G. S.X.
0.86 93.1 At4g25300 828633 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. H.G. S.X.
0.86 93.1 At2g14095 815895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB O.I. H.G. S.X.
0.83 91.4 At3g16440 820892 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, O.I. H.G. S.X.
0.81 90.4 At2g17080 816213 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV O.I. H.G. S.X.
0.81 90.4 At4g15350 827201 CYP705A2 member of CYP705A O.I. H.G. S.X.
0.80 89.8 At4g10350 826627 ANAC070 (Arabidopsis NAC domain containing protein 70) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. H.G. S.X.
0.80 89.8 At1g26820 839225 RNS3 (RIBONUCLEASE 3) Encodes ribonuclease RNS3. O.I. H.G. S.X.
0.80 89.8 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA O.I. H.G. S.X.
0.79 89.1 At1g34500 840352 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF O.I. H.G. S.X.
0.79 89.1 At2g47550 819368 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO O.I. H.G. S.X.
0.78 88.6 At1g52050 841634 jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO O.I. H.G. S.X.
0.76 87.4 At2g17070 816212 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PMOBF O.I. H.G. S.X.
0.76 87.4 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA O.I. H.G. S.X.
0.72 84.8 At5g51310 835205 gibberellin 20-oxidase-related F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM O.I. H.G. S.X.
0.69 82.9 At2g02630 814792 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.67 81.6 At1g02430 839242 ATARFD1B (ADP-ribosylation factor D1B) A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. O.I. H.G. S.X.
0.67 81.6 At2g43600 818962 glycoside hydrolase family 19 protein F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV O.I. H.G. S.X.
0.61 76.7 At3g05390 819703 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.84	91.9	At2g37540	818330	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	H.G.	S.X.
0.96	97.3	At2g32620	817822	ATCSLB02	encodes a gene similar to cellulose synthase	O.I.	H.G.	S.X.
0.94	96.7	At2g32610	817821	ATCSLB01	encodes a gene similar to cellulose synthase	O.I.	H.G.	S.X.
0.92	96.0	At1g47600	841169	BGLU34 (BETA GLUCOSIDASE 34)	Encodes a putative myrosinase. Over-expression led to a glucosinolate profile change.	O.I.	H.G.	S.X.
0.92	96.0	At4g15300	827196	CYP702A2	a member of the cytochrome P450 gene family. molecular function unknown.	O.I.	H.G.	S.X.
0.92	96.0	At3g20160	821560	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	F:farnesyltranstransferase activity;P:isoprenoid biosynthetic process;C:unknown;OBFPMAV	O.I.	H.G.	S.X.
0.91	95.6	At1g06090	837118	fatty acid desaturase family protein	F:oxidoreductase activity;P:lipid metabolic process;C:cellular_component unknown;BOMFPV	O.I.	H.G.	S.X.
0.91	95.6	At4g15360	827202	CYP705A3	member of CYP705A	O.I.	H.G.	S.X.
0.91	95.6	At4g22640	828360	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	H.G.	S.X.
0.91	95.6	At2g37700	818347	catalytic/ iron ion binding / oxidoreductase	F:oxidoreductase activity, iron ion binding, catalytic activity;P:oxidation reduction, fatty acid biosynthetic process;C:endoplasmic reticulum;BOMPFV	O.I.	H.G.	S.X.
0.90	95.1	At5g58784	835994	dehydrodolichyl diphosphate synthase	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:endomembrane system;OBAFMP	O.I.	H.G.	S.X.
0.89	94.6	At3g06460	819823	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFOPV	O.I.	H.G.	S.X.
0.89	94.6	At3g47400	823894	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBOFVMA	O.I.	H.G.	S.X.
0.89	94.6	At3g49190	824080	condensation domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAF	O.I.	H.G.	S.X.
0.88	94.0	At5g16230	831483	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	F:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:chloroplast;PBOM	O.I.	H.G.	S.X.
0.88	94.0	At5g24070	832472	peroxidase family protein	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM	O.I.	H.G.	S.X.
0.88	94.0	At4g15370	827203	BARS1 (BARUOL SYNTHASE 1)	Encodes an oxidosqualene cyclase that primarily produces the tetracyclic triterpene baruol in vitro and when expressed in yeast. It can also make 22 other minor triterpenoid products with varying numbers of rings.	O.I.	H.G.	S.X.
0.87	93.5	At1g47620	841171	CYP96A8	member of CYP96A	O.I.	H.G.	S.X.
0.87	93.5	At1g66030	842916	CYP96A14P	encodes a protein with cytochrome P450 domain	O.I.	H.G.	S.X.
0.86	93.1	At4g25300	828633	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	H.G.	S.X.
0.86	93.1	At2g14095	815895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFB	O.I.	H.G.	S.X.
0.83	91.4	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	O.I.	H.G.	S.X.
0.81	90.4	At2g17080	816213	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBV	O.I.	H.G.	S.X.
0.81	90.4	At4g15350	827201	CYP705A2	member of CYP705A	O.I.	H.G.	S.X.
0.80	89.8	At4g10350	826627	ANAC070 (Arabidopsis NAC domain containing protein 70)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.80	89.8	At1g26820	839225	RNS3 (RIBONUCLEASE 3)	Encodes ribonuclease RNS3.	O.I.	H.G.	S.X.
0.80	89.8	At5g60530	836174	late embryogenesis abundant protein-related / LEA protein-related	F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA	O.I.	H.G.	S.X.
0.79	89.1	At1g34500	840352	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:biological_process unknown;C:cellular_component unknown;BOPF	O.I.	H.G.	S.X.
0.79	89.1	At2g47550	819368	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO	O.I.	H.G.	S.X.
0.78	88.6	At1g52050	841634	jacalin lectin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO	O.I.	H.G.	S.X.
0.76	87.4	At2g17070	816212	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PMOBF	O.I.	H.G.	S.X.
0.76	87.4	At5g04970	830379	pectinesterase, putative	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA	O.I.	H.G.	S.X.
0.72	84.8	At5g51310	835205	gibberellin 20-oxidase-related	F:oxidoreductase activity, iron ion binding;P:gibberellin biosynthetic process;C:unknown;POBFM	O.I.	H.G.	S.X.
0.69	82.9	At2g02630	814792	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	H.G.	S.X.
0.67	81.6	At1g02430	839242	ATARFD1B (ADP-ribosylation factor D1B)	A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins.	O.I.	H.G.	S.X.
0.67	81.6	At2g43600	818962	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:endomembrane system;PBOMFV	O.I.	H.G.	S.X.
0.61	76.7	At3g05390	819703	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PABO	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0151700
Gene name
Homology with Arabidopsis	Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-2)
Module size	6 genes
NF	0.31
%ile	33.3

Co-expression analysis

Gene ID Os01g0151700 Gene name Homology with ArabidopsisSimilar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-2) Module size 6 genes NF 0.31 %ile 33.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0151700

Gene name
Homology with Arabidopsis Similar to At2g37540: short-chain dehydrogenase/reductase (SDR) family protein (HF=5e-2)

Module size 6 genes

NF 0.31

%ile 33.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays