CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0147900

Gene name
Homology with Arabidopsis Similar to At3g55440: TPI (TRIOSEPHOSPHATE ISOMERASE) (HF=1e-23)

Module size 6 genes

NF 0.67

%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0147900 M87064.1 - Triosephosphate isomerase, cytosolic (EC 5.3.1.1)(TIM) (Triose- phosphate isomerase) 1e-23 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) O.I. H.G. S.X.
0.67 87.2 0.98 Os08g0126300 AK105038.1 - Glyceraldehyde-3-phosphate dehydrogenase(Fragment) 6e-23 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0670700 AK119242.1 - Glycine-rich RNA-binding protein GRP1A 2e-6 At4g39260 GR-RBP8 O.I. H.G. S.X.
0.63 82.7 0.97 Os02g0161900 AK101547.1 - Ubiquitin 0 At4g05320 UBQ10 (POLYUBIQUITIN 10) O.I. H.G. S.X.
0.63 82.7 0.98 Os02g0121300 L29470.1 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)(PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-bindingprotein) 9e-12 At4g38740 ROC1 (ROTAMASE CYP 1) O.I. H.G. S.X.
0.35 41.7 0.98 Os06g0152100 AK121519.1 - Profilin 2 8e-15 At2g19760 PRF1 (PROFILIN 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.4 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0030036 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
0.154 1 GO:0007010 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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