CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0144600

Gene name
Homology with Arabidopsis Similar to At5g25220: KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) (HF=5e-1)

Module size 6 genes

NF 0.14

%ile 12.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os01g0144600 AK061501.1 - Hypothetical protein 5e-1 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.53 71.3 0.94 Os05g0400800 AK065701.1 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase,chloroplast precursor (EC 5.3.1.16)(Phosphoribosylformimino-5-aminoimidazole carboxamideribotide isomerase) (5-proFAR isomerase) (BBM II) 7e-10 At2g36230 APG10 (ALBINO AND PALE GREEN 10) O.I. H.G. S.X.
0.19 15.1 0.95 Os12g0203100 CB676273 - Conserved hypothetical protein 4e-1 At1g22800 methyltransferase O.I. H.G. S.X.
0.11 6.5 0.93 Os09g0431500 AK103717.1 - Transcription initiation factor TFIID, 23-30 kDasubunit family protein 1e-1 At1g34419 unknown protein O.I. H.G. S.X.
0.11 6.5 0.93 Os04g0640800 AK065522.1 - Programmed cell death protein 2, C-terminal domaincontaining protein 8e-4 At1g34790 TT1 (transparent testa 1) O.I. H.G. S.X.
0.07 3.7 0.93 Os07g0508200 AK069914.1 - Hypothetical protein 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.5 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.1 97.7 GSM431926 Root- +Fe+P biological rep2 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.8 97.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM431925 Root- +Fe+P biological rep1 GSE17245 Transcriptome analysis of iron and phosphorus interaction in rice seedlings
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0000105 The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid.
0.125 1 GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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