CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0144100

Gene name
Homology with Arabidopsis Similar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=3e-33)

Module size 6 genes

NF 0.19

%ile 17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.92 Os01g0144100 AK058909.1 - Thylakoid lumenal 15 kDa protein, chloroplastprecursor (p15) 3e-33 At2g44920 thylakoid lumenal 15 kDa protein, chloroplast O.I. H.G. S.X.
0.48 63.7 0.91 Os01g0111100 AK065672.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 2e-3 At2g27570 sulfotransferase family protein O.I. H.G. S.X.
0.23 21.2 0.94 Os09g0481800 AK062669.1 - Nitrogen-fixing NifU, C-terminal domain containingprotein 7e+0 At5g50240 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) O.I. H.G. S.X.
0.15 10.3 0.93 Os10g0502000 AK099827.1 - Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4) 3e-18 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast O.I. H.G. S.X.
0.10 5.7 0.93 Os04g0591000 AK072902.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.09 4.9 0.92 Os04g0602100 AK121197.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-10 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	51.1	0.83	Os12g0538700	AK063610.1	-	AT.I.24-1 protein (Fragment)	3e-2	At3g02000	ROXY1	O.I.	H.G.	S.X.
0.31	34.5	0.92	Os08g0504500	AK062330.1	-	Conserved hypothetical protein	2e+0	At5g67620	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.92	Os09g0439500	AK067780.1	-	Chlorophyll A-B binding protein family protein	1e-7	At1g19150	LHCA6	O.I.	H.G.	S.X.
0.21	17.9	0.94	Os04g0626400	AK059851.1	-	Calycin family protein	7e-16	At3g47860	apolipoprotein D-related	O.I.	H.G.	S.X.
0.20	16.5	0.85	Os01g0368900	AK107858.1	-	GLUTAREDOXIN	2e-12	At3g02000	ROXY1	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os03g0781400	AK071970.1	-	-	7e-1	At1g08580	unknown protein	O.I.	H.G.	S.X.
0.19	15.1	0.93	Os01g0894700	NM_190253.1	-	Hypothetical protein	8e+0	Atmg00640	-	O.I.	H.G.	S.X.
0.17	12.6	0.91	Os08g0276100	AK105984.1	-	Conserved hypothetical protein	9e-1	At5g42790	PAF1	O.I.	H.G.	S.X.
0.17	12.6	0.93	Os07g0133700	AU055734	-	Peptidylprolyl isomerase, FKBP-type domaincontaining protein	4e-27	At5g13410	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.17	12.6	0.81	Os08g0371200	AK120474.1	-	Conserved hypothetical protein	5e+0	At5g57000	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.6 96.9 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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