Co-expression analysis

Gene ID	Os01g0144100
Gene name
Homology with Arabidopsis	Similar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=3e-33)
Module size	6 genes
NF	0.19
%ile	17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	93.1	0.92	Os01g0144100	AK058909.1	-	Thylakoid lumenal 15 kDa protein, chloroplastprecursor (p15)	3e-33	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	0.91	Os01g0111100	AK065672.1	-	Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein	2e-3	At2g27570	sulfotransferase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	0.94	Os09g0481800	AK062669.1	-	Nitrogen-fixing NifU, C-terminal domain containingprotein	7e+0	At5g50240	PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.15	10.3	0.93	Os10g0502000	AK099827.1	-	Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4)	3e-18	At5g53490	thylakoid lumenal 17.4 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.10	5.7	0.93	Os04g0591000	AK072902.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At3g49940	LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	0.92	Os04g0602100	AK121197.1	-	Haem peroxidase, plant/fungal/bacterial familyprotein	2e-10	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	97.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6	97.3	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5	97.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2	97.1	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0	97.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
5.6	96.9	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2	96.7	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1618617_at, orthologous to the query gene, Os01g0144100

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	1618617_at	At2g44920	hypothetical protein LOC100244370	-	6e-19	At2g44920	thylakoid lumenal 15 kDa protein, chloroplast	O.I.	H.G.	S.X.	Please select
0.71	89.5	1618219_at	At2g44920	hypothetical protein LOC100267536	-	3e-10	At2g45190	AFO (ABNORMAL FLORAL ORGANS)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1609474_at	At2g44920	hypothetical protein LOC100252381	-	2e-3	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.60	81.9	1618727_at	At2g44920	hypothetical protein LOC100247185	-	9e-15	At2g46910	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1610416_at	At2g44920	-	-	4e-4	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.54	75.7	1613768_at	At2g44920	hypothetical protein LOC100252130	-	2e-11	At3g14930	HEME1	O.I.	H.G.	S.X.	Please select
0.53	75.2	1622348_s_at	At2g44920	hypothetical protein LOC100248623	-	1e-34	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1611293_at	At2g44920	hypothetical protein LOC100267754	-	3e-19	At2g43030	ribosomal protein L3 family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1607271_at	At2g44920	hypothetical protein LOC100258274	-	2e-2	At3g26070	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1614317_at	At2g44920	hypothetical protein LOC100245459	-	2e-2	At4g37230	oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative	O.I.	H.G.	S.X.	Please select
0.49	69.3	1616874_at	At2g44920	-	-	2e-18	At5g58250	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1615609_at	At2g44920	hypothetical protein LOC100268043	-	1e-11	At3g25920	RPL15	O.I.	H.G.	S.X.	Please select
0.47	67.7	1616856_at	At2g44920	hypothetical protein LOC100246151	-	1e-19	At1g64430	-	O.I.	H.G.	S.X.	Please select
0.47	67.7	1612940_at	At2g44920	hypothetical protein LOC100244154	-	8e-9	At2g38025	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	1614655_at	At2g44920	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1614765_at	At2g44920	hypothetical protein LOC100242287	-	1e-78	At3g59870	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1608628_at	At2g44920	hypothetical protein LOC100262894	-	1e-22	At3g01480	CYP38 (cyclophilin 38)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1618865_at	At2g44920	hypothetical protein LOC100254959	-	4e+0	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.41	58.7	1609228_at	At2g44920	hypothetical protein LOC100247047	-	9e-5	At2g21385	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1619477_at	At2g44920	hypothetical protein LOC100250737	-	3e-59	At3g48730	GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1609523_at	At2g44920	hypothetical protein LOC100250310	-	7e-2	At2g28020	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608602_at	At2g44920	hypothetical protein LOC100264906	-	4e-2	At3g09210	PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1610716_at	At2g44920	hypothetical protein LOC100265925	-	5e-16	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1611683_s_at	At2g44920	similar to A_IG002N01.31 gene product	-	1e-30	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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