CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0144100

Gene name
Homology with Arabidopsis Similar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=3e-33)

Module size 6 genes

NF 0.19

%ile 17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.92 Os01g0144100 AK058909.1 - Thylakoid lumenal 15 kDa protein, chloroplastprecursor (p15) 3e-33 At2g44920 thylakoid lumenal 15 kDa protein, chloroplast O.I. H.G. S.X.
0.48 63.7 0.91 Os01g0111100 AK065672.1 - Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein 2e-3 At2g27570 sulfotransferase family protein O.I. H.G. S.X.
0.23 21.2 0.94 Os09g0481800 AK062669.1 - Nitrogen-fixing NifU, C-terminal domain containingprotein 7e+0 At5g50240 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) O.I. H.G. S.X.
0.15 10.3 0.93 Os10g0502000 AK099827.1 - Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4) 3e-18 At5g53490 thylakoid lumenal 17.4 kDa protein, chloroplast O.I. H.G. S.X.
0.10 5.7 0.93 Os04g0591000 AK072902.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) O.I. H.G. S.X.
0.09 4.9 0.92 Os04g0602100 AK121197.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 2e-10 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.6 96.9 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, HVSMEa0012N07r2_at, orthologous to the query gene, Os01g0144100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 61.0 HVSMEa0012N07r2_at At2g44920 - - 1e-3 At2g44920 thylakoid lumenal 15 kDa protein, chloroplast O.I. H.G. S.X.
0.16 15.3 Contig8089_at At2g44920 - - 1e-11 At1g03030 phosphoribulokinase/uridine kinase family protein O.I. H.G. S.X.
0.15 14.1 Contig7958_s_at At2g44920 - - 7e-8 At2g02040 PTR2 (PEPTIDE TRANSPORTER 2) O.I. H.G. S.X.
0.13 11.6 Contig13233_at At2g44920 - - 5e-1 At2g42260 UVI4 (UV-B-INSENSITIVE 4) O.I. H.G. S.X.
0.09 7.4 Contig11989_at At2g44920 - - 2e+0 At5g16580 BGLU2 (BETA GLUCOSIDASE 2) O.I. H.G. S.X.
0.07 5.8 Contig6837_at At2g44920 - - 1e-2 At5g59030 COPT1 (copper transporter 1) O.I. H.G. S.X.
0.02 1.8 Contig3605_at At2g44920 - - 3e+0 At3g55570 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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