Co-expression analysis

Gene ID Os01g0144100
Gene name
Homology with ArabidopsisSimilar to At2g44920: thylakoid lumenal 15 kDa protein, chloroplast (HF=3e-33)
Module size 6 genes
NF 0.19
%ile 17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.92Os01g0144100AK058909.1-Thylakoid lumenal 15 kDa protein, chloroplastprecursor (p15)3e-33At2g44920thylakoid lumenal 15 kDa protein, chloroplastO.I.H.G.S.X.
0.4863.70.91Os01g0111100AK065672.1-Peptidyl-prolyl cis-trans isomerase, cyclophilintype domain containing protein2e-3At2g27570sulfotransferase family proteinO.I.H.G.S.X.
0.2321.20.94Os09g0481800AK062669.1-Nitrogen-fixing NifU, C-terminal domain containingprotein7e+0At5g50240PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)O.I.H.G.S.X.
0.1510.30.93Os10g0502000AK099827.1-Thylakoid lumenal 17.4 kDa protein, chloroplastprecursor (P17.4)3e-18At5g53490thylakoid lumenal 17.4 kDa protein, chloroplastO.I.H.G.S.X.
0.105.70.93Os04g0591000AK072902.1-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-1At3g49940LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38)O.I.H.G.S.X.
0.094.90.92Os04g0602100AK121197.1-Haem peroxidase, plant/fungal/bacterial familyprotein2e-10At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.397.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.697.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.597.2GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.297.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.097.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.696.9GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.296.7GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g44920, orthologous to the query gene, Os01g0144100

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5065.3At2g44920819101thylakoid lumenal 15 kDa protein, chloroplastF:molecular_function unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOAMPVO.I.H.G.S.X.
0.8089.8At3g56650824832thylakoid lumenal 20 kDa proteinF:unknown;P:unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;PBOO.I.H.G.S.X.
0.7385.5At1g20810838672immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinF:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid lumen, chloroplast thylakoid lumen, chloroplast;BOPMFO.I.H.G.S.X.
0.7184.2At3g23700821951S1 RNA-binding domain-containing proteinF:RNA binding;P:response to cold;C:chloroplast stroma, nucleus, chloroplast;BOPMFAO.I.H.G.S.X.
0.6176.7At3g55330824699PPL1 (PsbP-like protein 1)F:calcium ion binding;P:photosynthesis;C:in 6 components;POBO.I.H.G.S.X.
0.6075.7At1g67700843095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;POO.I.H.G.S.X.
0.5974.7At5g23120832376HCF136encodes a stability and/or assembly factor of photosystem IIO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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