CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0139600

Gene name
Homology with Arabidopsis Similar to At3g02600: LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) (HF=3e-3)

Module size 6 genes

NF 0.79

%ile 97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.91 Os01g0139600 AK073130.1 - Lipid phosphate phosphatase 2 (EC 3.1.3.-)(AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2)(Prenyl diphosphate phosphatase) 3e-3 At3g02600 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) O.I. H.G. S.X.
0.77 93.1 0.93 Os07g0188700 AK073755.1 - Exostosin-like family protein 2e-2 At5g03795 - O.I. H.G. S.X.
0.71 89.6 0.91 Os02g0652800 AK063448.1 - Major facilitator superfamily protein 4e-6 At4g25220 transporter, putative O.I. H.G. S.X.
0.67 87.2 0.91 Os12g0156200 AY333186.1 - DNA-binding factor of bZIP class 9e-1 At3g18260 reticulon family protein (RTNLB9) O.I. H.G. S.X.
0.67 87.2 0.94 Os09g0266900 9639.m02141 - - 4e+0 At5g36910 THI2.2 (THIONIN 2.2) O.I. H.G. S.X.
0.67 87.2 0.94 Os01g0633400 NM_192953.1 - CBS domain containing protein 2e-1 At2g04430 atnudt5 (Arabidopsis thaliana Nudix hydrolase homolog 5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.3 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.1 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0009987 Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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