Co-expression analysis

Gene ID	Os01g0136200
Gene name
Homology with Arabidopsis	Similar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=1e-4)
Module size	6 genes
NF	0.88
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.87	Os01g0136200	AK121025.1	-	17.7 kDa heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.91	98.9	0.90	Os03g0277300	9631.m01656	-	Heat shock protein 70	7e-98	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.83	95.8	0.86	Os03g0245800	AB020973.1	-	-	5e-1	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.85	Os03g0267000	AU165294	-	Low molecular mass heat shock protein Oshsp18.0	6e-3	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.87	Os01g0136100	X60820.1	-	16.9 kDa class I heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.89	Os04g0445100	AK063700.1	-	22.7 kDa class IV heat shock protein precursor	2e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
52.4	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
14.2	98.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.4	98.1	GSM159213	Seed (S3, 5 - 10 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
10.3	98.1	GSM159207	Seed (S1, 0 - 2 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
9.8	98.0	GSM159217	Seed (S4, 11 - 20 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.2	97.9	GSM159214	Seed (S3, 5 - 10 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.1	97.9	GSM159215	Seed (S3, 5 - 10 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.7	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.1	97.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.095	1	GO:0006811	The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.057	1	GO:0006813	The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

A co-expression module including the maize gene, Zm.2482.1.A1_at, orthologous to the query gene, Os01g0136200

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	Zm.2482.1.A1_at	At1g53540	16.9 kDa class I heat shock protein 1	-	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.16775.1.A1_at	At1g53540	hypothetical protein LOC100274644	-	7e-3	At5g49970	ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5'-PHOSPHATE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.39	45.6	ZmAffx.107.1.A1_at	At1g53540	hypothetical protein LOC100275548	-	8e-1	At4g19095	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	ZmAffx.930.1.A1_at	At1g53540	-	-	9e+0	Atmg01210	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	Zm.5087.1.A1_at	At1g53540	-	-	3e-1	At5g37478	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13869.1.A1_x_at	At1g53540	R2R3MYB-domain protein	-	4e+0	At2g04910	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.24	19.8	ZmAffx.1089.1.A1_at	At1g53540	hydrolase	-	3e+0	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	Zm.13307.1.S1_at	At1g53540	-	-	1e+0	At1g10200	WLIM1	O.I.	H.G.	S.X.	Please select
0.22	16.9	Zm.6085.2.A1_a_at	At1g53540	hypothetical protein LOC100280198	-	1e+1	At5g53820	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	ZmAffx.491.1.S1_at	At1g53540	-	-	9e+0	At5g11412	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.19	12.8		-	-	-	-	-	-	O.I.	H.G.	S.X.	Please select
0.16	9.4	Zm.13984.1.A1_at	At1g53540	phytosulfokine peptide precursor1	-	1e+0	At5g27860	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	ZmAffx.1103.1.A1_at	At1g53540	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.	Please select
0.10	4.6	Zm.17928.1.A1_at	At1g53540	hypothetical protein LOC100217238	-	4e+0	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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