CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0136200

Gene name
Homology with Arabidopsis Similar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=1e-4)

Module size 6 genes

NF 0.88

%ile 99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.87 Os01g0136200 AK121025.1 - 17.7 kDa heat shock protein 1e-4 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.91 98.9 0.90 Os03g0277300 9631.m01656 - Heat shock protein 70 7e-98 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) O.I. H.G. S.X.
0.83 95.8 0.86 Os03g0245800 AB020973.1 - - 5e-1 At5g42965 nucleic acid binding / ribonuclease H O.I. H.G. S.X.
0.73 91.1 0.85 Os03g0267000 AU165294 - Low molecular mass heat shock protein Oshsp18.0 6e-3 At5g59720 HSP18.2 (heat shock protein 18.2) O.I. H.G. S.X.
0.67 87.2 0.87 Os01g0136100 X60820.1 - 16.9 kDa class I heat shock protein 1e-4 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0445100 AK063700.1 - 22.7 kDa class IV heat shock protein precursor 2e+0 At1g54200 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.87	Os01g0136200	AK121025.1	-	17.7 kDa heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.91	98.9	0.90	Os03g0277300	9631.m01656	-	Heat shock protein 70	7e-98	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.
0.83	95.8	0.86	Os03g0245800	AB020973.1	-	-	5e-1	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.
0.73	91.1	0.85	Os03g0267000	AU165294	-	Low molecular mass heat shock protein Oshsp18.0	6e-3	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.
0.67	87.2	0.87	Os01g0136100	X60820.1	-	16.9 kDa class I heat shock protein	1e-4	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.67	87.2	0.89	Os04g0445100	AK063700.1	-	22.7 kDa class IV heat shock protein precursor	2e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.4 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.2 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM159213 Seed (S3, 5 - 10 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
10.3 98.1 GSM159207 Seed (S1, 0 - 2 dap), biological rep 1 GSE6893 Expression data for reproductive development in rice
9.8 98.0 GSM159217 Seed (S4, 11 - 20 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.2 97.9 GSM159214 Seed (S3, 5 - 10 dap), biological rep 2 GSE6893 Expression data for reproductive development in rice
9.1 97.9 GSM159215 Seed (S3, 5 - 10 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.7 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM159209 Seed (S1, 0 - 2 dap), biological rep 3 GSE6893 Expression data for reproductive development in rice
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
52.4	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
14.2	98.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.4	98.1	GSM159213	Seed (S3, 5 - 10 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
10.3	98.1	GSM159207	Seed (S1, 0 - 2 dap), biological rep 1	GSE6893	Expression data for reproductive development in rice
9.8	98.0	GSM159217	Seed (S4, 11 - 20 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.2	97.9	GSM159214	Seed (S3, 5 - 10 dap), biological rep 2	GSE6893	Expression data for reproductive development in rice
9.1	97.9	GSM159215	Seed (S3, 5 - 10 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.7	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM159209	Seed (S1, 0 - 2 dap), biological rep 3	GSE6893	Expression data for reproductive development in rice
7.1	97.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.057 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.095	1	GO:0006811	The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.057	1	GO:0006813	The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

A co-expression module including the barley gene, Contig2008_s_at, orthologous to the query gene, Os01g0136200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 89.8 Contig2008_s_at At1g53540 - - 2e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.51 67.5 Contig14227_at At1g53540 - - 7e-1 At2g30810 gibberellin-regulated family protein O.I. H.G. S.X.
0.51 67.5 rbaal31o11_x_at At1g53540 - - 5e+0 At4g31050 lipoyltransferase (LIP2p) O.I. H.G. S.X.
0.51 67.5 HV14M05r_at At1g53540 - - 9e-2 At5g38490 DNA binding O.I. H.G. S.X.
0.50 66.9 Contig26035_at At1g53540 - - 2e+0 At1g10600 - O.I. H.G. S.X.
0.47 62.2 HS05N06r_at At1g53540 - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.46 61.0 HA08g16r_at At1g53540 - - 8e-1 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.44 58.9 HVSMEb0002K02r2_s_at At1g53540 - - 4e+0 At5g07500 PEI1 O.I. H.G. S.X.
0.44 58.9 Contig23664_at At1g53540 - - 1e+0 At3g51080 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.43 56.4 Contig12986_at At1g53540 - - 7e-13 At3g28007 nodulin MtN3 family protein O.I. H.G. S.X.
0.40 53.1 HVSMEg0002G01r2_x_at At1g53540 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.39 50.5 Contig446_at At1g53540 - - 1e-33 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) O.I. H.G. S.X.
0.37 47.9 EBma08_SQ003_L03_at At1g53540 - - 6e-2 At2g40060 protein binding / structural molecule O.I. H.G. S.X.
0.36 47.1 U08169_at At1g53540 - - 9e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) O.I. H.G. S.X.
0.35 45.1 EBro02_SQ008_P15_at At1g53540 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.35 45.1 V00087.1_at At1g53540 - - 3e-1 At5g43525 - O.I. H.G. S.X.
0.34 43.6 EBem04_SQ003_H15_at At1g53540 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.33 42.6 HA27P15r_at At1g53540 - - 2e+1 At5g10990 auxin-responsive family protein O.I. H.G. S.X.
0.29 35.5 HV_CEa0014H05r2_at At1g53540 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.22 24.2 Contig16296_at At1g53540 - - 6e+0 At5g19510 elongation factor 1B alpha-subunit 2 (eEF1Balpha2) O.I. H.G. S.X.
0.17 16.9 Contig3976_at At1g53540 - - 5e+0 At5g33330 RNase H domain-containing protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.76	89.8	Contig2008_s_at	At1g53540	-	-	2e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.51	67.5	Contig14227_at	At1g53540	-	-	7e-1	At2g30810	gibberellin-regulated family protein	O.I.	H.G.	S.X.
0.51	67.5	rbaal31o11_x_at	At1g53540	-	-	5e+0	At4g31050	lipoyltransferase (LIP2p)	O.I.	H.G.	S.X.
0.51	67.5	HV14M05r_at	At1g53540	-	-	9e-2	At5g38490	DNA binding	O.I.	H.G.	S.X.
0.50	66.9	Contig26035_at	At1g53540	-	-	2e+0	At1g10600	-	O.I.	H.G.	S.X.
0.47	62.2	HS05N06r_at	At1g53540	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.46	61.0	HA08g16r_at	At1g53540	-	-	8e-1	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.
0.44	58.9	HVSMEb0002K02r2_s_at	At1g53540	-	-	4e+0	At5g07500	PEI1	O.I.	H.G.	S.X.
0.44	58.9	Contig23664_at	At1g53540	-	-	1e+0	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.43	56.4	Contig12986_at	At1g53540	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.40	53.1	HVSMEg0002G01r2_x_at	At1g53540	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.
0.39	50.5	Contig446_at	At1g53540	-	-	1e-33	At1g42970	GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT)	O.I.	H.G.	S.X.
0.37	47.9	EBma08_SQ003_L03_at	At1g53540	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.
0.36	47.1	U08169_at	At1g53540	-	-	9e+0	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	O.I.	H.G.	S.X.
0.35	45.1	EBro02_SQ008_P15_at	At1g53540	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	V00087.1_at	At1g53540	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.
0.34	43.6	EBem04_SQ003_H15_at	At1g53540	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	HA27P15r_at	At1g53540	-	-	2e+1	At5g10990	auxin-responsive family protein	O.I.	H.G.	S.X.
0.29	35.5	HV_CEa0014H05r2_at	At1g53540	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.22	24.2	Contig16296_at	At1g53540	-	-	6e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.
0.17	16.9	Contig3976_at	At1g53540	-	-	5e+0	At5g33330	RNase H domain-containing protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0136200
Gene name
Homology with Arabidopsis	Similar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=1e-4)
Module size	6 genes
NF	0.88
%ile	99.5

Co-expression analysis

Gene ID Os01g0136200 Gene name Homology with ArabidopsisSimilar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=1e-4) Module size 6 genes NF 0.88 %ile 99.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0951GO:0006811The directed movement of charged atoms or small charged molecules into, out of, within or between cells.0.0571GO:0006813The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0136200

Gene name
Homology with Arabidopsis Similar to At1g53540: 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) (HF=1e-4)

Module size 6 genes

NF 0.88

%ile 99.5

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.057 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays