CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0127100

Gene name
Homology with Arabidopsis Similar to At5g15254: unknown protein (HF=3e+0)

Module size 7 genes

NF 0.58

%ile 79.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.39 48.3 0.98 Os01g0127100 AK106749.1 - Conserved hypothetical protein 3e+0 At5g15254 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os04g0512800 9632.m04152 - - 1e+1 At5g22170 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os10g0424100 9638.m02453 - BTB/POZ domain containing protein 7e+0 At3g24506 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os04g0472000 9632.m03753 - - 5e+1 At5g45490 disease resistance protein-related O.I. H.G. S.X.
0.59 78.0 0.98 Os06g0480100 9634.m02735 - - 2e+0 At5g63130 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.98 Os01g0371900 NM_193844.1 - - 1e+1 At3g48570 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.53 71.3 0.98 Os12g0473400 9640.m02775 - - 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
72.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.2 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.7 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.1 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig9797_at, orthologous to the query gene, Os01g0127100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig9797_at At5g15254 - - 1e-2 At1g23010 LPR1 (Low Phosphate Root1) O.I. H.G. S.X.
0.63 80.3 Contig6491_at At5g15254 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.55 72.0 Contig13168_at At5g15254 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.50 66.9 Contig11383_at At5g15254 - - 2e+0 At4g36560 unknown protein O.I. H.G. S.X.
0.43 56.4 Contig11789_at At5g15254 - - 2e+0 At3g04620 nucleic acid binding O.I. H.G. S.X.
0.40 53.1 Contig13436_at At5g15254 - - 3e-1 At3g23200 unknown protein O.I. H.G. S.X.
0.35 45.1 Contig24772_at At5g15254 - - 1e-4 At5g63740 zinc finger protein-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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