CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0124200

Gene name
Homology with Arabidopsis Similar to At4g00310: EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) (HF=2e+0)

Module size 6 genes

NF 0.09

%ile 6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.85 Os01g0124200 AB098712.1 - Bowman Birk trypsin inhibitor 2e+0 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) O.I. H.G. S.X.
0.50 68.0 0.89 Os03g0701200 AK099563.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.50 68.0 0.89 Os07g0245100 AK100710.1 - Nitrogen fixation protein 8e-48 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.50 68.0 0.90 Os05g0542200 AK071306.1 - Epoxide hydrolase family protein 7e-2 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.05 2.5 0.85 Os09g0478600 AK109529.1 - The start codon is not identified. 5e+0 At3g06890 unknown protein O.I. H.G. S.X.
0.04 2.0 0.85 Os05g0176700 AK071729.1 - Conserved hypothetical protein 6e-6 At5g23100 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1611674_at, orthologous to the query gene, Os01g0124200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 1611674_at At4g00310 hypothetical protein LOC100242654 - 4e+0 At5g06790 unknown protein O.I. H.G. S.X.
0.35 48.5 1614633_at At4g00310 similar to TGA-type basic leucine zipper protein TGA2.1 - 1e-16 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.31 41.3 1608757_at At4g00310 hypothetical protein LOC100266172 - 3e-17 At5g14250 COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) O.I. H.G. S.X.
0.25 30.5 1607035_at At4g00310 hypothetical protein LOC100250837 - 2e-17 At2g24050 MIF4G domain-containing protein / MA3 domain-containing protein O.I. H.G. S.X.
0.14 14.4 1607281_at At4g00310 hypothetical protein LOC100247365 - 5e-115 At5g55190 RAN3 (RAN GTPASE 3) O.I. H.G. S.X.
0.11 11.3 1614368_a_at At4g00310 hypothetical protein LOC100266601 /// hypothetical protein LOC100260276 - 4e+0 At1g35440 CYCT1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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