CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0124200

Gene name
Homology with Arabidopsis Similar to At4g00310: EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) (HF=2e+0)

Module size 6 genes

NF 0.09

%ile 6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.85 Os01g0124200 AB098712.1 - Bowman Birk trypsin inhibitor 2e+0 At4g00310 EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) O.I. H.G. S.X.
0.50 68.0 0.89 Os03g0701200 AK099563.1 - Haloacid dehalogenase-like hydrolase domaincontaining protein 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.50 68.0 0.89 Os07g0245100 AK100710.1 - Nitrogen fixation protein 8e-48 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.50 68.0 0.90 Os05g0542200 AK071306.1 - Epoxide hydrolase family protein 7e-2 At5g53050 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.05 2.5 0.85 Os09g0478600 AK109529.1 - The start codon is not identified. 5e+0 At3g06890 unknown protein O.I. H.G. S.X.
0.04 2.0 0.85 Os05g0176700 AK071729.1 - Conserved hypothetical protein 6e-6 At5g23100 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	68.0	0.85	Os01g0124200	AB098712.1	-	Bowman Birk trypsin inhibitor	2e+0	At4g00310	EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)	O.I.	H.G.	S.X.
0.50	68.0	0.89	Os03g0701200	AK099563.1	-	Haloacid dehalogenase-like hydrolase domaincontaining protein	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.50	68.0	0.89	Os07g0245100	AK100710.1	-	Nitrogen fixation protein	8e-48	At5g28050	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.50	68.0	0.90	Os05g0542200	AK071306.1	-	Epoxide hydrolase family protein	7e-2	At5g53050	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.05	2.5	0.85	Os09g0478600	AK109529.1	-	The start codon is not identified.	5e+0	At3g06890	unknown protein	O.I.	H.G.	S.X.
0.04	2.0	0.85	Os05g0176700	AK071729.1	-	Conserved hypothetical protein	6e-6	At5g23100	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.0	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7	97.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.20928.3.S1_at, orthologous to the query gene, Os01g0124200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 98.7 Ta.20928.3.S1_at At4g00310 - - 4e+0 At5g50050 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.42 60.9 TaAffx.112298.1.S1_at At4g00310 - - 4e-3 At3g57150 NAP57 (Arabidopsis thaliana homologue of NAP57) O.I. H.G. S.X.
0.34 48.1 Ta.5681.1.S1_x_at At4g00310 - - 1e-4 At2g41420 proline-rich family protein O.I. H.G. S.X.
0.33 46.9 TaAffx.108475.1.S1_at At4g00310 - - 4e+0 At1g62981 unknown protein O.I. H.G. S.X.
0.33 46.9 TaAffx.143995.11.A1_at At4g00310 floral homeotic protein - 9e-7 At5g60120 TOE2 O.I. H.G. S.X.
0.33 46.9 TaAffx.56599.1.S1_at At4g00310 - - 4e+0 At5g08160 ATPK3 O.I. H.G. S.X.
0.28 39.2 TaAffx.8387.1.S1_at At4g00310 - - 4e-40 At5g54310 AGD5 (ARF-GAP domain 5) O.I. H.G. S.X.
0.27 35.6 Ta.3840.2.S1_x_at At4g00310 - - 2e-5 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative O.I. H.G. S.X.
0.22 27.1 TaAffx.64914.1.S1_at At4g00310 - - 4e+0 At1g51915 cryptdin protein-related O.I. H.G. S.X.
0.21 25.5 TaAffx.80484.1.S1_at At4g00310 - - 4e+0 At1g04778 unknown protein O.I. H.G. S.X.
0.21 25.5 TaAffx.106823.1.S1_at At4g00310 - - 4e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.20 24.0 Ta.28483.2.S1_at At4g00310 - - 1e+1 At4g04423 endo-1,3(4)-beta-glucanase O.I. H.G. S.X.
0.18 21.0 Ta.3083.2.A1_at At4g00310 - - 4e+0 At3g05602 unknown protein O.I. H.G. S.X.
0.18 21.0 TaAffx.28260.1.S1_at At4g00310 - - 1e+0 Atmg01200 - O.I. H.G. S.X.
0.17 19.8 TaAffx.105943.1.S1_at At4g00310 - - 2e+1 At5g07470 PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3) O.I. H.G. S.X.
0.17 19.8 TaAffx.62815.1.S1_at At4g00310 - - 4e+0 At4g14060 major latex protein-related / MLP-related O.I. H.G. S.X.
0.16 18.2 Ta.2138.2.S1_at At4g00310 - - 1e+0 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein O.I. H.G. S.X.
0.15 17.1 TaAffx.112556.1.S1_at At4g00310 - - 4e+0 At1g67760 ATP binding / protein binding / unfolded protein binding O.I. H.G. S.X.
0.15 17.1 TaAffx.51264.1.S1_at At4g00310 - - 2e+0 At2g05370 - O.I. H.G. S.X.
0.14 15.8 TaAffx.58853.1.S1_at At4g00310 - - 3e+0 At1g57565 - O.I. H.G. S.X.
0.13 14.6 Ta.7698.3.S1_at At4g00310 - - 2e+1 At5g60615 - O.I. H.G. S.X.
0.13 14.6 TaAffx.28450.1.S1_at At4g00310 - - 4e+0 At2g21620 RD2 O.I. H.G. S.X.
0.11 12.4 TaAffx.25064.1.S1_at At4g00310 - - 2e+0 At2g19290 unknown protein O.I. H.G. S.X.
0.09 10.4 TaAffx.83190.1.S1_at At4g00310 - - 4e+0 At5g59340 WOX2 (WUSCHEL RELATED HOMEOBOX 2) O.I. H.G. S.X.
0.08 9.4 TaAffx.93090.1.S1_at At4g00310 - - 4e-3 At4g37550 formamidase, putative / formamide amidohydrolase, putative O.I. H.G. S.X.
0.02 3.6 TaAffx.70119.1.S1_at At4g00310 - - 4e+0 At4g19100 unknown protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.93	98.7	Ta.20928.3.S1_at	At4g00310	-	-	4e+0	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.42	60.9	TaAffx.112298.1.S1_at	At4g00310	-	-	4e-3	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	O.I.	H.G.	S.X.
0.34	48.1	Ta.5681.1.S1_x_at	At4g00310	-	-	1e-4	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.108475.1.S1_at	At4g00310	-	-	4e+0	At1g62981	unknown protein	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.143995.11.A1_at	At4g00310	floral homeotic protein	-	9e-7	At5g60120	TOE2	O.I.	H.G.	S.X.
0.33	46.9	TaAffx.56599.1.S1_at	At4g00310	-	-	4e+0	At5g08160	ATPK3	O.I.	H.G.	S.X.
0.28	39.2	TaAffx.8387.1.S1_at	At4g00310	-	-	4e-40	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.
0.27	35.6	Ta.3840.2.S1_x_at	At4g00310	-	-	2e-5	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	O.I.	H.G.	S.X.
0.22	27.1	TaAffx.64914.1.S1_at	At4g00310	-	-	4e+0	At1g51915	cryptdin protein-related	O.I.	H.G.	S.X.
0.21	25.5	TaAffx.80484.1.S1_at	At4g00310	-	-	4e+0	At1g04778	unknown protein	O.I.	H.G.	S.X.
0.21	25.5	TaAffx.106823.1.S1_at	At4g00310	-	-	4e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.20	24.0	Ta.28483.2.S1_at	At4g00310	-	-	1e+1	At4g04423	endo-1,3(4)-beta-glucanase	O.I.	H.G.	S.X.
0.18	21.0	Ta.3083.2.A1_at	At4g00310	-	-	4e+0	At3g05602	unknown protein	O.I.	H.G.	S.X.
0.18	21.0	TaAffx.28260.1.S1_at	At4g00310	-	-	1e+0	Atmg01200	-	O.I.	H.G.	S.X.
0.17	19.8	TaAffx.105943.1.S1_at	At4g00310	-	-	2e+1	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.
0.17	19.8	TaAffx.62815.1.S1_at	At4g00310	-	-	4e+0	At4g14060	major latex protein-related / MLP-related	O.I.	H.G.	S.X.
0.16	18.2	Ta.2138.2.S1_at	At4g00310	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.
0.15	17.1	TaAffx.112556.1.S1_at	At4g00310	-	-	4e+0	At1g67760	ATP binding / protein binding / unfolded protein binding	O.I.	H.G.	S.X.
0.15	17.1	TaAffx.51264.1.S1_at	At4g00310	-	-	2e+0	At2g05370	-	O.I.	H.G.	S.X.
0.14	15.8	TaAffx.58853.1.S1_at	At4g00310	-	-	3e+0	At1g57565	-	O.I.	H.G.	S.X.
0.13	14.6	Ta.7698.3.S1_at	At4g00310	-	-	2e+1	At5g60615	-	O.I.	H.G.	S.X.
0.13	14.6	TaAffx.28450.1.S1_at	At4g00310	-	-	4e+0	At2g21620	RD2	O.I.	H.G.	S.X.
0.11	12.4	TaAffx.25064.1.S1_at	At4g00310	-	-	2e+0	At2g19290	unknown protein	O.I.	H.G.	S.X.
0.09	10.4	TaAffx.83190.1.S1_at	At4g00310	-	-	4e+0	At5g59340	WOX2 (WUSCHEL RELATED HOMEOBOX 2)	O.I.	H.G.	S.X.
0.08	9.4	TaAffx.93090.1.S1_at	At4g00310	-	-	4e-3	At4g37550	formamidase, putative / formamide amidohydrolase, putative	O.I.	H.G.	S.X.
0.02	3.6	TaAffx.70119.1.S1_at	At4g00310	-	-	4e+0	At4g19100	unknown protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0124200
Gene name
Homology with Arabidopsis	Similar to At4g00310: EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) (HF=2e+0)
Module size	6 genes
NF	0.09
%ile	6.6

Co-expression analysis

Gene ID Os01g0124200 Gene name Homology with ArabidopsisSimilar to At4g00310: EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) (HF=2e+0) Module size 6 genes NF 0.09 %ile 6.6

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaVitis_viniferaZea_mays

Gene ID Os01g0124200

Gene name
Homology with Arabidopsis Similar to At4g00310: EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8) (HF=2e+0)

Module size 6 genes

NF 0.09

%ile 6.6

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays