CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0123000

Gene name
Homology with Arabidopsis Similar to At3g27210: unknown protein (HF=8e-1)

Module size 7 genes

NF 0.18

%ile 15.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.81 Os01g0123000 AK106806.1 - Retrofit 8e-1 At3g27210 unknown protein O.I. H.G. S.X.
0.23 21.2 0.85 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 O.I. H.G. S.X.
0.23 21.2 0.83 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.19 15.1 0.83 Os06g0123000 AK108643.1 - Hypothetical protein 8e+0 At2g47420 dimethyladenosine transferase, putative O.I. H.G. S.X.
0.14 9.3 0.85 Os04g0156200 9632.m00640 - Ribulose-phosphate binding barrel domaincontaining protein 7e-2 At1g64330 myosin heavy chain-related O.I. H.G. S.X.
0.12 7.2 0.84 Os01g0147800 AK106926.1 - Protein of unknown function DUF547 domaincontaining protein 2e-1 At5g03380 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.09 4.9 0.86 Os05g0578600 9633.m04728 - Polygalacturonase PG2 1e-6 At1g10640 polygalacturonase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.3 99.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM154938 Root_tZ-treatment_30min_replicate 3 GSE6719 Cytokinin responsive genes in rice
10.0 98.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM154942 Root_tZ-treatment_120min_replicate 1 GSE6719 Cytokinin responsive genes in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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