CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0117600

Gene name
Homology with Arabidopsis Similar to At3g07070: protein kinase family protein (HF=3e-4)

Module size 8 genes

NF 0.09

%ile 6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.73 Os01g0117600 AK065867.1 - - 3e-4 At3g07070 protein kinase family protein O.I. H.G. S.X.
0.17 12.6 0.73 Os01g0117200 AK120089.1 - ARK protein (Fragment) 1e-3 At5g18610 protein kinase family protein O.I. H.G. S.X.
0.15 10.3 0.73 Os01g0564300 AK064825.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 8e-1 At1g06260 cysteine proteinase, putative O.I. H.G. S.X.
0.09 4.9 0.73 Os12g0222300 AK107929.1 - Hypothetical protein 2e+1 At5g02600 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.06 3.0 0.73 Os05g0142000 AK071647.1 - Conserved hypothetical protein 3e-1 At1g35830 VQ motif-containing protein O.I. H.G. S.X.
0.06 3.0 0.73 Os01g0563000 AK067665.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 3e-1 At3g62550 universal stress protein (USP) family protein O.I. H.G. S.X.
0.05 2.5 0.72 Os07g0518500 AK099924.1 - Cytochrome P450 family protein 9e-1 At5g15830 AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3) O.I. H.G. S.X.
0.05 2.5 0.73 Os11g0579400 AK064468.1 - - 3e-1 At1g74480 RWP-RK domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
66.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
44.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.0 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
13.9 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage