CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0117500

Gene name
Homology with Arabidopsis Similar to At5g38280: PR5K (HF=2e-1)

Module size 6 genes

NF 0.26

%ile 25.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.95 Os01g0117500 9629.m00193 - LRK14 2e-1 At5g38280 PR5K O.I. H.G. S.X.
0.55 73.7 0.95 Os01g0870500 AK065439.1 - Protein kinase domain containing protein 1e+0 At5g65700 BAM1 (BARELY ANY MERISTEM 1) O.I. H.G. S.X.
0.50 68.0 0.96 Os08g0137300 AK120060.1 - Conserved hypothetical protein 1e+0 At4g24500 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.18 13.7 0.96 Os01g0848300 AK120668.1 - TPR-like domain containing protein 2e-6 At1g71420 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.15 10.3 0.96 Os11g0661300 AK064725.1 - ADP/ATP translocase-like protein 5e-8 At3g08580 AAC1 (ADP/ATP CARRIER 1) O.I. H.G. S.X.
0.10 5.7 0.96 Os05g0451200 AK073037.1 - Hypothetical protein 4e-5 At2g38060 PHT4 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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