Co-expression analysis

Gene ID Os01g0108400
Gene name
Homology with ArabidopsisSimilar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)
Module size 6 genes
NF 0.03
%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.71Os01g0108400AU096466-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e-1At1g76940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5371.30.70Os12g0559200BM421235-Lipoxygenase (EC 1.13.11.12)2e+0At5g57750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4762.30.57Os12g0247700AK066682.1-Beta-glucosidase aggregating factor2e+0At4g09650ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)O.I.H.G.S.X.
0.031.40.76Os01g0508500AK120501.1-Hypothetical protein9e-2At1g10140-O.I.H.G.S.X.
0.010.50.70Os03g0130100AK110783.1-AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5)1e-3At1g66120acyl-activating enzyme 11 (AAE11)O.I.H.G.S.X.
0.010.50.65Os03g06502009631.m04325-Cytochrome P450 family protein9e-1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.099.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.998.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1621077_s_at, orthologous to the query gene, Os01g0108400

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5779.81621077_s_atAt1g76940hypothetical protein LOC100256381-2e-17At3g51880HMGB1 (HIGH MOBILITY GROUP B 1)O.I.H.G.S.X.
0.5779.81613581_atAt1g76940hypothetical protein LOC100262899-1e-17At3g17800-O.I.H.G.S.X.
0.4361.51614445_atAt1g76940hypothetical protein LOC100250076-3e-36At1g63970ISPFO.I.H.G.S.X.
0.4057.71611652_s_atAt1g76940hypothetical protein LOC100264196-2e-53At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.3243.11621483_atAt1g76940hypothetical protein LOC100254964-2e-6At1g12810proline-rich family proteinO.I.H.G.S.X.
0.2937.71608138_s_atAt1g76940--0Atcg00120-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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