CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0108400

Gene name
Homology with Arabidopsis Similar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)

Module size 6 genes

NF 0.03

%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.71 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.53 71.3 0.70 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.3 0.57 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) O.I. H.G. S.X.
0.03 1.4 0.76 Os01g0508500 AK120501.1 - Hypothetical protein 9e-2 At1g10140 - O.I. H.G. S.X.
0.01 0.5 0.70 Os03g0130100 AK110783.1 - AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5) 1e-3 At1g66120 acyl-activating enzyme 11 (AAE11) O.I. H.G. S.X.
0.01 0.5 0.65 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.0 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.37834.1.S1_at, orthologous to the query gene, Os01g0108400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 TaAffx.37834.1.S1_at At1g76940 - - 5e+0 At5g58640 selenoprotein-related O.I. H.G. S.X.
0.88 94.4 Ta.188.1.S1_at At1g76940 hypothetical LOC543363 - 4e-2 At5g48290 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.86 94.1 TaAffx.7388.1.S1_at At1g76940 - - 4e+0 At5g44550 integral membrane family protein O.I. H.G. S.X.
0.86 94.1 Ta.21348.2.S1_at At1g76940 sulfur-rich/thionin-like protein /// sulfur-rich/thionin-like protein - 4e+0 At3g61280 - O.I. H.G. S.X.
0.86 94.1 Ta.21348.1.S1_s_at At1g76940 sulfur-rich/thionin-like protein /// sulfur-rich/thionin-like protein - 6e+0 At1g54880 unknown protein O.I. H.G. S.X.
0.86 94.1 Ta.21348.1.S1_x_at At1g76940 sulfur-rich/thionin-like protein - 6e+0 At1g54880 unknown protein O.I. H.G. S.X.
0.77 90.8 Ta.191.1.S1_at At1g76940 thiol protease - 3e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.61 82.0 Ta.23206.3.S1_at At1g76940 - - 6e-2 At2g03670 CDC48B O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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