Co-expression analysis

Gene ID Os01g0108400
Gene name
Homology with ArabidopsisSimilar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)
Module size 6 genes
NF 0.03
%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.71Os01g0108400AU096466-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e-1At1g76940RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5371.30.70Os12g0559200BM421235-Lipoxygenase (EC 1.13.11.12)2e+0At5g57750zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4762.30.57Os12g0247700AK066682.1-Beta-glucosidase aggregating factor2e+0At4g09650ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)O.I.H.G.S.X.
0.031.40.76Os01g0508500AK120501.1-Hypothetical protein9e-2At1g10140-O.I.H.G.S.X.
0.010.50.70Os03g0130100AK110783.1-AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5)1e-3At1g66120acyl-activating enzyme 11 (AAE11)O.I.H.G.S.X.
0.010.50.65Os03g06502009631.m04325-Cytochrome P450 family protein9e-1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.099.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.998.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.298.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377079Genomic DNA - 45 day old leaf sample - mutant g6686GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.398.1GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig6170_s_at, orthologous to the query gene, Os01g0108400

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5774.9Contig6170_s_atAt1g76940--1e-1At4g27890nuclear movement family proteinO.I.H.G.S.X.
0.8092.5Contig6173_atAt1g76940--2e-36At3g21180ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)O.I.H.G.S.X.
0.8092.5HVSMEf0005G15r2_x_atAt1g76940--5e+0At5g16567unknown proteinO.I.H.G.S.X.
0.5674.3Contig23069_atAt1g76940--2e-2At5g50490NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5)O.I.H.G.S.X.
0.5572.0Contig6615_atAt1g76940--2e+0At4g10610CID12O.I.H.G.S.X.
0.1412.9Contig3339_atAt1g76940--9e-6At1g64720CP5O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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