CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0108400

Gene name
Homology with Arabidopsis Similar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)

Module size 6 genes

NF 0.03

%ile 2.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.71 Os01g0108400 AU096466 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 4e-1 At1g76940 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.53 71.3 0.70 Os12g0559200 BM421235 - Lipoxygenase (EC 1.13.11.12) 2e+0 At5g57750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.3 0.57 Os12g0247700 AK066682.1 - Beta-glucosidase aggregating factor 2e+0 At4g09650 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) O.I. H.G. S.X.
0.03 1.4 0.76 Os01g0508500 AK120501.1 - Hypothetical protein 9e-2 At1g10140 - O.I. H.G. S.X.
0.01 0.5 0.70 Os03g0130100 AK110783.1 - AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5) 1e-3 At1g66120 acyl-activating enzyme 11 (AAE11) O.I. H.G. S.X.
0.01 0.5 0.65 Os03g0650200 9631.m04325 - Cytochrome P450 family protein 9e-1 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.71	Os01g0108400	AU096466	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	4e-1	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.53	71.3	0.70	Os12g0559200	BM421235	-	Lipoxygenase (EC 1.13.11.12)	2e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.57	Os12g0247700	AK066682.1	-	Beta-glucosidase aggregating factor	2e+0	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.
0.03	1.4	0.76	Os01g0508500	AK120501.1	-	Hypothetical protein	9e-2	At1g10140	-	O.I.	H.G.	S.X.
0.01	0.5	0.70	Os03g0130100	AK110783.1	-	AMP-binding protein (Adenosine monophosphatebinding protein 5 AMPBP5)	1e-3	At1g66120	acyl-activating enzyme 11 (AAE11)	O.I.	H.G.	S.X.
0.01	0.5	0.65	Os03g0650200	9631.m04325	-	Cytochrome P450 family protein	9e-1	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.0 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
28.0	99.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.9	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377079	Genomic DNA - 45 day old leaf sample - mutant g6686	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g76940, orthologous to the query gene, Os01g0108400

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.67 81.6 At1g76940 844029 RNA recognition motif (RRM)-containing protein F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO O.I. H.G. S.X.
0.54 69.5 At2g42670 818867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.54 69.5 At1g22020 838807 SHM6 (serine hydroxymethyltransferase 6) Encodes a putative serine hydroxymethyltransferase. O.I. H.G. S.X.
0.51 66.3 At1g72175 843549 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. H.G. S.X.
0.49 63.5 At3g04970 819657 zinc finger (DHHC type) family protein F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP O.I. H.G. S.X.
0.47 61.2 At3g53030 824469 SRPK4 (Ser/Arg-rich protein kinase 4) Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. O.I. H.G. S.X.
0.47 61.2 At2g22090 816744 UBP1 interacting protein 1a (UBA1a) encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. O.I. H.G. S.X.
0.45 58.3 At2g44900 819099 armadillo/beta-catenin repeat family protein / F-box family protein ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. O.I. H.G. S.X.
0.44 57.2 At1g35470 840440 SPla/RYanodine receptor (SPRY) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.43 55.3 At1g28320 839726 DEG15 Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH. O.I. H.G. S.X.
0.42 53.9 At4g00170 828017 vesicle-associated membrane family protein / VAMP family protein F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.41 52.4 At3g56740 824841 ubiquitin-associated (UBA)/TS-N domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB O.I. H.G. S.X.
0.39 48.4 At2g40410 818634 Ca(2+)-dependent nuclease, putative F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.39 48.4 At5g21040 832228 FBX2 (F-BOX PROTEIN 2) Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. O.I. H.G. S.X.
0.39 48.4 At1g79810 844320 TED3 (REVERSAL OF THE DET PHENOTYPE 3) Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. O.I. H.G. S.X.
0.38 46.7 At5g04520 830331 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM O.I. H.G. S.X.
0.38 46.7 At3g12100 820384 cation efflux family protein / metal tolerance protein, putative F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA O.I. H.G. S.X.
0.36 43.6 At3g19460 821480 reticulon family protein (RTNLB11) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF O.I. H.G. S.X.
0.36 43.6 At3g03740 821170 ATBPM4 (BTB-POZ and MATH domain 4) F:protein binding;P:biological_process unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.34 39.8 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. H.G. S.X.
0.34 39.8 At3g05210 819685 ERCC1 encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. O.I. H.G. S.X.
0.34 39.8 At5g46190 834661 KH domain-containing protein F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB O.I. H.G. S.X.
0.33 38.1 At3g20650 821612 mRNA capping enzyme family protein F:catalytic activity;P:mRNA capping;C:chloroplast;OVMFPB O.I. H.G. S.X.
0.33 38.1 At3g56840 824851 FAD-dependent oxidoreductase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV O.I. H.G. S.X.
0.33 38.1 At4g15475 827219 F-box family protein (FBL4) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV O.I. H.G. S.X.
0.33 38.1 At3g01150 821129 PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1) Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. O.I. H.G. S.X.
0.33 38.1 At3g27320 822351 hydrolase F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV O.I. H.G. S.X.
0.33 38.1 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA O.I. H.G. S.X.
0.32 35.7 At1g78800 844216 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF O.I. H.G. S.X.
0.30 32.1 At1g30970 839984 SUF4 (suppressor of FRIGIDA4) Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus. O.I. H.G. S.X.
0.29 30.3 At4g24880 828590 unknown protein F:unknown;P:unknown;C:unknown;MPOF O.I. H.G. S.X.
0.28 30.3 At3g58050 824974 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA O.I. H.G. S.X.
0.28 30.3 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.27 26.2 At1g60430 842338 ARPC3 (actin-related protein C3) F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP O.I. H.G. S.X.
0.27 26.2 At1g11060 837647 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF O.I. H.G. S.X.
0.26 24.4 At4g33650 829506 DRP3A (DYNAMIN-RELATED PROTEIN 3A) Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B. O.I. H.G. S.X.
0.26 24.4 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO O.I. H.G. S.X.
0.26 24.4 At4g37880 829944 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. H.G. S.X.
0.24 20.7 At1g79975 - - - O.I. H.G. S.X.
0.23 19.3 At4g39240 830080 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVF O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.67	81.6	At1g76940	844029	RNA recognition motif (RRM)-containing protein	F:nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO	O.I.	H.G.	S.X.
0.54	69.5	At2g42670	818867	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.54	69.5	At1g22020	838807	SHM6 (serine hydroxymethyltransferase 6)	Encodes a putative serine hydroxymethyltransferase.	O.I.	H.G.	S.X.
0.51	66.3	At1g72175	843549	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	H.G.	S.X.
0.49	63.5	At3g04970	819657	zinc finger (DHHC type) family protein	F:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFP	O.I.	H.G.	S.X.
0.47	61.2	At3g53030	824469	SRPK4 (Ser/Arg-rich protein kinase 4)	Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.	O.I.	H.G.	S.X.
0.47	61.2	At2g22090	816744	UBP1 interacting protein 1a (UBA1a)	encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.	O.I.	H.G.	S.X.
0.45	58.3	At2g44900	819099	armadillo/beta-catenin repeat family protein / F-box family protein	ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.	O.I.	H.G.	S.X.
0.44	57.2	At1g35470	840440	SPla/RYanodine receptor (SPRY) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.43	55.3	At1g28320	839726	DEG15	Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.	O.I.	H.G.	S.X.
0.42	53.9	At4g00170	828017	vesicle-associated membrane family protein / VAMP family protein	F:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.41	52.4	At3g56740	824841	ubiquitin-associated (UBA)/TS-N domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOB	O.I.	H.G.	S.X.
0.39	48.4	At2g40410	818634	Ca(2+)-dependent nuclease, putative	F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.39	48.4	At5g21040	832228	FBX2 (F-BOX PROTEIN 2)	Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.	O.I.	H.G.	S.X.
0.39	48.4	At1g79810	844320	TED3 (REVERSAL OF THE DET PHENOTYPE 3)	Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.	O.I.	H.G.	S.X.
0.38	46.7	At5g04520	830331	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFM	O.I.	H.G.	S.X.
0.38	46.7	At3g12100	820384	cation efflux family protein / metal tolerance protein, putative	F:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPA	O.I.	H.G.	S.X.
0.36	43.6	At3g19460	821480	reticulon family protein (RTNLB11)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	O.I.	H.G.	S.X.
0.36	43.6	At3g03740	821170	ATBPM4 (BTB-POZ and MATH domain 4)	F:protein binding;P:biological_process unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.34	39.8	At5g07270	830618	ankyrin repeat family protein	F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	H.G.	S.X.
0.34	39.8	At3g05210	819685	ERCC1	encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10.	O.I.	H.G.	S.X.
0.34	39.8	At5g46190	834661	KH domain-containing protein	F:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOB	O.I.	H.G.	S.X.
0.33	38.1	At3g20650	821612	mRNA capping enzyme family protein	F:catalytic activity;P:mRNA capping;C:chloroplast;OVMFPB	O.I.	H.G.	S.X.
0.33	38.1	At3g56840	824851	FAD-dependent oxidoreductase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV	O.I.	H.G.	S.X.
0.33	38.1	At4g15475	827219	F-box family protein (FBL4)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBV	O.I.	H.G.	S.X.
0.33	38.1	At3g01150	821129	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	O.I.	H.G.	S.X.
0.33	38.1	At3g27320	822351	hydrolase	F:hydrolase activity;P:metabolic process;C:unknown;BOPFMAV	O.I.	H.G.	S.X.
0.33	38.1	At1g16010	838171	magnesium transporter CorA-like family protein (MRS2-1)	F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA	O.I.	H.G.	S.X.
0.32	35.7	At1g78800	844216	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMF	O.I.	H.G.	S.X.
0.30	32.1	At1g30970	839984	SUF4 (suppressor of FRIGIDA4)	Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus.	O.I.	H.G.	S.X.
0.29	30.3	At4g24880	828590	unknown protein	F:unknown;P:unknown;C:unknown;MPOF	O.I.	H.G.	S.X.
0.28	30.3	At3g58050	824974	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA	O.I.	H.G.	S.X.
0.28	30.3	At5g18190	831937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.27	26.2	At1g60430	842338	ARPC3 (actin-related protein C3)	F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP	O.I.	H.G.	S.X.
0.27	26.2	At1g11060	837647	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF	O.I.	H.G.	S.X.
0.26	24.4	At4g33650	829506	DRP3A (DYNAMIN-RELATED PROTEIN 3A)	Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.	O.I.	H.G.	S.X.
0.26	24.4	At4g05000	825842	VPS28-2	F:transporter activity;P:transport;C:ESCRT I complex;MFPO	O.I.	H.G.	S.X.
0.26	24.4	At4g37880	829944	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	H.G.	S.X.
0.24	20.7	At1g79975	-	-	-	O.I.	H.G.	S.X.
0.23	19.3	At4g39240	830080	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVF	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0108400
Gene name
Homology with Arabidopsis	Similar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)
Module size	6 genes
NF	0.03
%ile	2.0

Co-expression analysis

Gene ID Os01g0108400 Gene name Homology with ArabidopsisSimilar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1) Module size 6 genes NF 0.03 %ile 2.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0108400

Gene name
Homology with Arabidopsis Similar to At1g76940: RNA recognition motif (RRM)-containing protein (HF=4e-1)

Module size 6 genes

NF 0.03

%ile 2.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays