CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0106400

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.01

%ile 0.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.70 Os01g0106400 AY071920.1 - Isoflavone reductase-like protein 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.07 3.7 0.76 Os03g0618300 AK073307.1 - Isopenicillin N synthase family protein 3e+0 At2g36820 - O.I. H.G. S.X.
0.01 0.5 0.86 Os02g0491400 AK073233.1 - Peptidylprolyl isomerase 7e-27 At3g25230 ROF1 (ROTAMASE FKBP 1) O.I. H.G. S.X.
- 0.1 0.84 Os02g0319300 AK105036.1 - Glutathione S-transferase, C-terminal-like domaincontaining protein 1e-13 At5g45020 - O.I. H.G. S.X.
- 0.1 0.86 Os05g0358400 AK071714.1 - Conserved hypothetical protein 7e-4 At4g16060 unknown protein O.I. H.G. S.X.
- 0.1 0.80 Os12g0482700 AK067039.1 - Aldo/keto reductase family protein 1e-8 At4g33670 L-galactose dehydrogenase (L-GalDH) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.9 99.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.3 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.6 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.6 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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