CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.94 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.91 Os01g0878900 AK104652.1 - 4,5-DOPA dioxygenase extradiol 2e+0 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.73 91.1 0.91 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.67 87.2 0.91 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.67 87.2 0.93 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.50 68.0 0.91 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.6	0.94	Os01g0106300	AK119550.1	-	Isoflavone reductase homolog IRL (EC 1.3.1.-)	6e-1	At2g34200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.80	94.6	0.91	Os01g0878900	AK104652.1	-	4,5-DOPA dioxygenase extradiol	2e+0	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.73	91.1	0.91	Os04g0305700	AK068128.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At2g43010	PIF4 (phytochrome interacting factor 4)	O.I.	H.G.	S.X.
0.67	87.2	0.91	Os03g0832800	AK062843.1	-	Phospholipid/glycerol acyltransferase familyprotein	4e-2	At4g00400	GPAT8 (glycerol-3-phosphate acyltransferase 8)	O.I.	H.G.	S.X.
0.67	87.2	0.93	Os06g0149100	AK099064.1	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At5g22810	GDSL-motif lipase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os04g0354600	AK065894.1	-	Male sterility protein family protein	4e+0	At1g35333	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.85	Os11g0460800	AK066902.1	-	Peptidase S10, serine carboxypeptidase familyprotein	6e-5	At5g36180	scpl1 (serine carboxypeptidase-like 1)	O.I.	H.G.	S.X.
0.83	95.8	0.85	Os12g0563600	AK069514.1	-	Protein of unknown function DUF538 family protein	3e-2	At1g28190	unknown protein	O.I.	H.G.	S.X.
0.83	95.8	0.88	Os06g0317600	AK120680.1	-	Glycine rich family protein	9e-5	At1g61255	-	O.I.	H.G.	S.X.
0.67	87.2	0.89	Os09g0373200	AK109686.1	-	Strictosidine synthase family protein	2e-1	At5g20540	ATBRXL4 (BREVIS RADIX-LIKE 4)	O.I.	H.G.	S.X.
0.63	82.7	0.80	Os02g0616100	AK064829.1	-	Leucine-rich repeat, plant specific containingprotein	4e+0	At1g54200	unknown protein	O.I.	H.G.	S.X.
0.63	82.7	0.87	Os05g0527800	AK068336.1	-	The start codon is not identified.	6e-5	At5g17050	UGT78D2 (UDP-GLUCOSYL TRANSFERASE 78D2)	O.I.	H.G.	S.X.
0.61	81.2	0.89	Os12g0411700	BI806808	-	ABC transporter related domain containing protein	9e-1	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.
0.60	79.7	0.80	Os08g0262500	AK060990.1	-	Cytochrome P450 family protein	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	O.I.	H.G.	S.X.
0.60	79.7	0.92	Os04g0353600	CB641510	-	Male sterility protein family protein	2e+0	At1g35333	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.90	Os01g0872600	AK060248.1	-	Hypothetical protein	6e-2	At1g72125	transporter	O.I.	H.G.	S.X.
0.50	68.0	0.83	Os05g0189900	AK061489.1	-	Acid phosphatase (Class B) family protein	9e-3	At1g20340	DRT112	O.I.	H.G.	S.X.
0.44	58.1	0.89	Os02g0646500	AF148877.1	-	Aldehyde dehydrogenase domain containing protein	4e+0	At5g01830	armadillo/beta-catenin repeat family protein / U-box domain-containing protein	O.I.	H.G.	S.X.
0.44	58.1	0.92	Os05g0215000	AK119543.1	-	BURP domain containing protein	1e+1	At3g20600	NDR1 (non race-specific disease resistance 1)	O.I.	H.G.	S.X.
0.42	53.9	0.88	Os02g0590400	AK099196.1	-	Lecithin:cholesterol acyltransferase familyprotein	9e-1	At5g63480	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.84	Os03g0439500	AK067507.1	-	2OG-Fe(II) oxygenase domain containing protein	8e-2	At1g78550	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.
0.40	51.1	0.85	Os04g0116600	AK064965.1	-	Short-chain dehydrogenase/reductase SDR familyprotein	4e+0	At2g20870	cell wall protein precursor, putative	O.I.	H.G.	S.X.
0.40	51.1	0.87	Os02g0308800	AK104533.1	-	Beta-Ig-H3/fasciclin domain containing protein	2e+0	At5g43280	ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1)	O.I.	H.G.	S.X.
0.40	51.1	0.89	Os04g0101400	AK100972.1	-	Cytochrome P450 family protein	1e-2	At5g06900	CYP93D1	O.I.	H.G.	S.X.
0.38	46.9	0.84	Os10g0528900	AF402801.1	-	Glutathione S-transferase, C-terminal domaincontaining protein	2e-4	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.
0.36	44.0	0.87	Os02g0816300	AK071879.1	-	Mast, C-terminal domain containing protein	1e-1	At5g63400	ADK1 (ADENYLATE KINASE 1)	O.I.	H.G.	S.X.
0.36	44.0	0.91	Os06g0289900	CR280016	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	8e-1	At2g37950	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.36	44.0	0.77	Os11g0449600	AK099523.1	-	Hypothetical protein	1e+0	At3g18960	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.33	38.8	0.78	Os02g0243300	AK105563.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	4e-6	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.33	38.8	0.79	Os10g0108700	AK060060.1	-	Transferase family protein	1e+1	At5g50460	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.
0.32	36.3	0.87	Os08g0238200	AK067264.1	-	Endo-1,3;1,4-beta-D-glucanase precursor (EC3.2.1.-)	2e+0	At3g23570	dienelactone hydrolase family protein	O.I.	H.G.	S.X.
0.30	32.7	0.87	Os07g0510400	AK119544.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.30	32.7	0.90	Os02g0589400	9630.m03609	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	1e-2	At5g47080	CKB1	O.I.	H.G.	S.X.
0.29	31.1	0.79	Os07g0282500	AK058321.1	-	Aldehyde oxidase and xanthine dehydrogenase,molybdopterin binding domain containing protein	6e-1	At4g13690	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.81	Os01g0508500	AK120501.1	-	Hypothetical protein	9e-2	At1g10140	-	O.I.	H.G.	S.X.
0.29	31.1	0.90	Os04g0454200	AK072059.1	-	Monosaccharide transporter 1	6e-2	At1g34580	monosaccharide transporter, putative	O.I.	H.G.	S.X.
0.27	27.5	0.86	Os04g0623200	AK105231.1	-	Conserved hypothetical protein	4e-1	At4g29230	anac075 (Arabidopsis NAC domain containing protein 75)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.8	99.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os01g0106300
Gene name
Homology with Arabidopsis	Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)
Module size	6 genes
NF	0.75
%ile	96.2

Co-expression analysis

Gene ID Os01g0106300 Gene name Homology with ArabidopsisSimilar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1) Module size 6 genes NF 0.75 %ile 96.2

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays