CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.94 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.91 Os01g0878900 AK104652.1 - 4,5-DOPA dioxygenase extradiol 2e+0 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.73 91.1 0.91 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.67 87.2 0.91 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.67 87.2 0.93 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.50 68.0 0.91 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1020.1.S1_a_at, orthologous to the query gene, Os01g0106300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 86.3 Ta.1020.1.S1_a_at At2g34200 - - 7e-4 At1g75290 oxidoreductase, acting on NADH or NADPH O.I. H.G. S.X.
0.93 98.7 Ta.25315.1.A1_at At2g34200 - - 2e+0 At4g15460 glycine-rich protein O.I. H.G. S.X.
0.84 93.6 Ta.30457.1.A1_at At2g34200 - - 5e+0 At2g33460 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) O.I. H.G. S.X.
0.80 92.2 Ta.4321.1.A1_at At2g34200 - - 6e-30 At4g18780 IRX1 (IRREGULAR XYLEM 1) O.I. H.G. S.X.
0.79 91.3 TaAffx.29139.1.S1_at At2g34200 - - 3e+0 At3g28070 nodulin MtN21 family protein O.I. H.G. S.X.
0.77 90.8 Ta.10273.1.S1_x_at At2g34200 - - 2e-2 At2g21100 disease resistance-responsive protein-related / dirigent protein-related O.I. H.G. S.X.
0.71 88.0 Ta.1020.2.A1_x_at At2g34200 - - 1e+0 At1g23680 unknown protein O.I. H.G. S.X.
0.69 86.9 Ta.11861.1.A1_at At2g34200 - - 9e+0 At2g10557 unknown protein O.I. H.G. S.X.
0.69 86.9 Ta.407.1.A1_at At2g34200 - - 1e-1 At3g01740 - O.I. H.G. S.X.
0.69 86.9 Ta.9926.2.S1_at At2g34200 - - 4e-1 At5g32440 - O.I. H.G. S.X.
0.69 86.9 Ta.21772.1.A1_at At2g34200 - - 3e-1 At4g19390 - O.I. H.G. S.X.
0.67 86.3 Ta.5571.1.S1_at At2g34200 - - 2e-6 At5g44030 CESA4 (CELLULOSE SYNTHASE A4) O.I. H.G. S.X.
0.63 83.1 TaAffx.77683.1.S1_x_at At2g34200 - - 8e+0 At3g13800 metallo-beta-lactamase family protein O.I. H.G. S.X.
0.63 83.1 Ta.10214.1.S1_at At2g34200 - - 4e-14 At5g17420 IRX3 (IRREGULAR XYLEM 3) O.I. H.G. S.X.
0.56 78.6 TaAffx.57410.1.S1_at At2g34200 - - 6e-5 At5g60920 COB (COBRA) O.I. H.G. S.X.
0.50 72.4 Ta.4350.1.A1_at At2g34200 Flavonoid O-methyltransferase - 2e+1 At4g08867 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage