CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.94 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.91 Os01g0878900 AK104652.1 - 4,5-DOPA dioxygenase extradiol 2e+0 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.73 91.1 0.91 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.67 87.2 0.91 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.67 87.2 0.93 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.50 68.0 0.91 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	94.6	0.94	Os01g0106300	AK119550.1	-	Isoflavone reductase homolog IRL (EC 1.3.1.-)	6e-1	At2g34200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.80	94.6	0.91	Os01g0878900	AK104652.1	-	4,5-DOPA dioxygenase extradiol	2e+0	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.73	91.1	0.91	Os04g0305700	AK068128.1	-	UDP-glucuronosyl/UDP-glucosyltransferase familyprotein	2e-1	At2g43010	PIF4 (phytochrome interacting factor 4)	O.I.	H.G.	S.X.
0.67	87.2	0.91	Os03g0832800	AK062843.1	-	Phospholipid/glycerol acyltransferase familyprotein	4e-2	At4g00400	GPAT8 (glycerol-3-phosphate acyltransferase 8)	O.I.	H.G.	S.X.
0.67	87.2	0.93	Os06g0149100	AK099064.1	-	Lipolytic enzyme, G-D-S-L family protein	3e+0	At5g22810	GDSL-motif lipase, putative	O.I.	H.G.	S.X.
0.50	68.0	0.91	Os04g0354600	AK065894.1	-	Male sterility protein family protein	4e+0	At1g35333	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
18.8	99.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.11272.1.S1_at, orthologous to the query gene, Os01g0106300

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 93.2 Gma.11272.1.S1_at At2g34200 - - 4e-1 At2g29500 17.6 kDa class I small heat shock protein (HSP17.6B-CI) O.I. H.G. S.X.
0.48 67.7 Gma.5009.1.S1_a_at At2g34200 - - 5e-44 At1g14530 THH1 (TOM THREE HOMOLOG 1) O.I. H.G. S.X.
0.44 63.3 Gma.11155.1.S1_at At2g34200 - - 5e-8 At2g40960 nucleic acid binding O.I. H.G. S.X.
0.43 60.6 Gma.16462.3.S1_at At2g34200 - - 6e-21 At1g21760 FBP7 (F-BOX PROTEIN 7) O.I. H.G. S.X.
0.41 58.1 Gma.16711.1.S1_at At2g34200 - - 1e-1 At5g27541 O.I. H.G. S.X.
0.41 58.1 Gma.15784.1.A1_at At2g34200 - - 9e-36 At5g55260 PPX2 (PROTEIN PHOSPHATASE X 2) O.I. H.G. S.X.
0.40 57.1 Gma.15087.1.S1_at At2g34200 - - 5e+0 At1g01530 AGL28 (AGAMOUS-LIKE 28) O.I. H.G. S.X.
0.39 54.5 Gma.4853.2.S1_a_at At2g34200 - - 2e-51 At5g56290 PEX5 (PEROXIN 5) O.I. H.G. S.X.
0.38 53.3 Gma.12040.1.S1_at At2g34200 - - 2e-2 At4g39870 - O.I. H.G. S.X.
0.37 51.7 Gma.1249.1.S1_at At2g34200 - - 2e-5 At3g21610 - O.I. H.G. S.X.
0.36 50.8 Gma.15571.1.A1_s_at At2g34200 - - 2e-5 At5g47750 D6PKL2 (D6 PROTEIN KINASE LIKE 2) O.I. H.G. S.X.
0.36 50.8 Gma.7014.1.S1_at At2g34200 - - 5e-1 At1g15740 leucine-rich repeat family protein O.I. H.G. S.X.
0.36 50.8 Gma.7533.1.S1_at At2g34200 - - 8e-15 At1g68020 ATTPS6 O.I. H.G. S.X.
0.34 47.2 Gma.8053.1.S1_at At2g34200 cryptochrome 2 - 2e-35 At1g04400 CRY2 (CRYPTOCHROME 2) O.I. H.G. S.X.
0.34 47.2 Gma.1370.1.S1_at At2g34200 - - 5e-2 At2g15230 ATLIP1 (Arabidopsis thaliana lipase 1) O.I. H.G. S.X.
0.33 46.1 Gma.185.1.S1_at At2g34200 syntaxin - 1e-45 At5g46860 VAM3 O.I. H.G. S.X.
0.30 40.4 Gma.6611.1.S1_at At2g34200 phosphatidylinositol-specific phospholipase C - 1e-21 At3g08510 ATPLC2 (PHOSPHOLIPASE C 2) O.I. H.G. S.X.
0.30 40.4 GmaAffx.69858.1.A1_at At2g34200 - - 5e+0 At5g48080 - O.I. H.G. S.X.
0.29 39.0 Gma.11925.1.S1_at At2g34200 - - 3e-2 At1g11530 ATCXXS1 (C-terminal cysteine residue is changed to a serine 1) O.I. H.G. S.X.
0.29 39.0 Gma.12428.1.S1_a_at At2g34200 - - 2e-28 At4g25680 unknown protein O.I. H.G. S.X.
0.28 39.0 GmaAffx.5717.1.S1_at At2g34200 - - 1e-60 At4g15780 ATVAMP724 O.I. H.G. S.X.
0.26 33.9 GmaAffx.92773.1.S1_s_at At2g34200 - - 4e-34 At4g31720 TAFII15 (TBP-ASSOCIATED FACTOR II 15) O.I. H.G. S.X.
0.25 32.6 Gma.4136.1.S1_at At2g34200 - - 4e-20 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.22 28.1 Gma.1034.2.S1_a_at At2g34200 - - 1e-11 At4g02430 pre-mRNA splicing factor, putative / SR1 protein, putative O.I. H.G. S.X.
0.19 23.7 Gma.8126.1.S1_a_at At2g34200 - - 6e-2 At2g04845 GCN5-related N-acetyltransferase (GNAT) family protein O.I. H.G. S.X.
0.18 22.3 Gma.1651.1.S1_at At2g34200 - - 4e-1 At3g17880 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) O.I. H.G. S.X.
0.17 21.2 Gma.7112.1.S1_a_at At2g34200 - - 3e-6 At1g30590 RNA polymerase I specific transcription initiation factor RRN3 family protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.87	93.2	Gma.11272.1.S1_at	At2g34200	-	-	4e-1	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	O.I.	H.G.	S.X.
0.48	67.7	Gma.5009.1.S1_a_at	At2g34200	-	-	5e-44	At1g14530	THH1 (TOM THREE HOMOLOG 1)	O.I.	H.G.	S.X.
0.44	63.3	Gma.11155.1.S1_at	At2g34200	-	-	5e-8	At2g40960	nucleic acid binding	O.I.	H.G.	S.X.
0.43	60.6	Gma.16462.3.S1_at	At2g34200	-	-	6e-21	At1g21760	FBP7 (F-BOX PROTEIN 7)	O.I.	H.G.	S.X.
0.41	58.1	Gma.16711.1.S1_at	At2g34200	-	-	1e-1	At5g27541		O.I.	H.G.	S.X.
0.41	58.1	Gma.15784.1.A1_at	At2g34200	-	-	9e-36	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	O.I.	H.G.	S.X.
0.40	57.1	Gma.15087.1.S1_at	At2g34200	-	-	5e+0	At1g01530	AGL28 (AGAMOUS-LIKE 28)	O.I.	H.G.	S.X.
0.39	54.5	Gma.4853.2.S1_a_at	At2g34200	-	-	2e-51	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.
0.38	53.3	Gma.12040.1.S1_at	At2g34200	-	-	2e-2	At4g39870	-	O.I.	H.G.	S.X.
0.37	51.7	Gma.1249.1.S1_at	At2g34200	-	-	2e-5	At3g21610	-	O.I.	H.G.	S.X.
0.36	50.8	Gma.15571.1.A1_s_at	At2g34200	-	-	2e-5	At5g47750	D6PKL2 (D6 PROTEIN KINASE LIKE 2)	O.I.	H.G.	S.X.
0.36	50.8	Gma.7014.1.S1_at	At2g34200	-	-	5e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.36	50.8	Gma.7533.1.S1_at	At2g34200	-	-	8e-15	At1g68020	ATTPS6	O.I.	H.G.	S.X.
0.34	47.2	Gma.8053.1.S1_at	At2g34200	cryptochrome 2	-	2e-35	At1g04400	CRY2 (CRYPTOCHROME 2)	O.I.	H.G.	S.X.
0.34	47.2	Gma.1370.1.S1_at	At2g34200	-	-	5e-2	At2g15230	ATLIP1 (Arabidopsis thaliana lipase 1)	O.I.	H.G.	S.X.
0.33	46.1	Gma.185.1.S1_at	At2g34200	syntaxin	-	1e-45	At5g46860	VAM3	O.I.	H.G.	S.X.
0.30	40.4	Gma.6611.1.S1_at	At2g34200	phosphatidylinositol-specific phospholipase C	-	1e-21	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.
0.30	40.4	GmaAffx.69858.1.A1_at	At2g34200	-	-	5e+0	At5g48080	-	O.I.	H.G.	S.X.
0.29	39.0	Gma.11925.1.S1_at	At2g34200	-	-	3e-2	At1g11530	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	O.I.	H.G.	S.X.
0.29	39.0	Gma.12428.1.S1_a_at	At2g34200	-	-	2e-28	At4g25680	unknown protein	O.I.	H.G.	S.X.
0.28	39.0	GmaAffx.5717.1.S1_at	At2g34200	-	-	1e-60	At4g15780	ATVAMP724	O.I.	H.G.	S.X.
0.26	33.9	GmaAffx.92773.1.S1_s_at	At2g34200	-	-	4e-34	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.
0.25	32.6	Gma.4136.1.S1_at	At2g34200	-	-	4e-20	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.
0.22	28.1	Gma.1034.2.S1_a_at	At2g34200	-	-	1e-11	At4g02430	pre-mRNA splicing factor, putative / SR1 protein, putative	O.I.	H.G.	S.X.
0.19	23.7	Gma.8126.1.S1_a_at	At2g34200	-	-	6e-2	At2g04845	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.
0.18	22.3	Gma.1651.1.S1_at	At2g34200	-	-	4e-1	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	O.I.	H.G.	S.X.
0.17	21.2	Gma.7112.1.S1_a_at	At2g34200	-	-	3e-6	At1g30590	RNA polymerase I specific transcription initiation factor RRN3 family protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0106300
Gene name
Homology with Arabidopsis	Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)
Module size	6 genes
NF	0.75
%ile	96.2

Co-expression analysis

Gene ID Os01g0106300 Gene name Homology with ArabidopsisSimilar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1) Module size 6 genes NF 0.75 %ile 96.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays