CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0106300

Gene name
Homology with Arabidopsis Similar to At2g34200: zinc finger (C3HC4-type RING finger) family protein (HF=6e-1)

Module size 6 genes

NF 0.75

%ile 96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.94 Os01g0106300 AK119550.1 - Isoflavone reductase homolog IRL (EC 1.3.1.-) 6e-1 At2g34200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.91 Os01g0878900 AK104652.1 - 4,5-DOPA dioxygenase extradiol 2e+0 At5g06210 RNA-binding protein, putative O.I. H.G. S.X.
0.73 91.1 0.91 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.67 87.2 0.91 Os03g0832800 AK062843.1 - Phospholipid/glycerol acyltransferase familyprotein 4e-2 At4g00400 GPAT8 (glycerol-3-phosphate acyltransferase 8) O.I. H.G. S.X.
0.67 87.2 0.93 Os06g0149100 AK099064.1 - Lipolytic enzyme, G-D-S-L family protein 3e+0 At5g22810 GDSL-motif lipase, putative O.I. H.G. S.X.
0.50 68.0 0.91 Os04g0354600 AK065894.1 - Male sterility protein family protein 4e+0 At1g35333 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.8 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.9 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g34200, orthologous to the query gene, Os01g0106300

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.61 76.7 At2g34200 817981 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:membrane;PMO O.I. H.G. S.X.
0.80 89.8 At3g21810 821735 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOPFBAV O.I. H.G. S.X.
0.78 88.6 At1g06230 837133 GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) This gene is predicted to encode a bromodomain-containing protein. Plant lines expressing RNAi constructs targeted against GTE4 show some resistance to agrobacterium-mediated root transformation. O.I. H.G. S.X.
0.70 83.5 At5g14960 831348 DEL2 (DP-E2F-LIKE 2) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOF O.I. H.G. S.X.
0.67 81.6 At2g24640 817000 UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MOFPBVA O.I. H.G. S.X.
0.67 81.6 At4g32350 829369 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV O.I. H.G. S.X.
0.67 81.6 At5g40710 834071 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:endomembrane system, intracellular;MPOBF O.I. H.G. S.X.
0.62 77.3 At1g03970 839356 GBF4 encodes a basic leucine zipper G-box binding factor that can bind to G-box motifs only as heterodimers with GBF2 or GBF3. A single amino acid change can confer G-box binding as homodimers. O.I. H.G. S.X.
0.62 77.3 At2g40820 818679 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOBVA O.I. H.G. S.X.
0.57 73.8 At2g28880 817437 emb1997 (embryo defective 1997) F:oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity;P:embryonic development ending in seed dormancy;C:chloroplast;BOFMAP O.I. H.G. S.X.
0.56 73.0 At3g17250 820986 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA O.I. H.G. S.X.
0.56 73.0 At3g49600 824122 UBP26 (UBIQUITIN-SPECIFIC PROTEASE 26) Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1. O.I. H.G. S.X.
0.53 68.6 At2g26990 817241 FUS12 (FUSCA 12) Represses photomorphogenesis and induces skotomorphogenesis in the dark. O.I. H.G. S.X.
0.50 65.3 At1g57790 842154 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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