CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0104600

Gene name
Homology with Arabidopsis Similar to At4g10180: DET1 (DE-ETIOLATED 1) (HF=7e-5)

Module size 6 genes

NF 0.32

%ile 35.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.95 Os01g0104600 AK100613.1 - Light-mediated development protein DET1(Deetiolated1) 7e-5 At4g10180 DET1 (DE-ETIOLATED 1) O.I. H.G. S.X.
0.44 58.1 0.95 Os06g0600700 AK102773.1 - Agenet domain containing protein 8e-4 At1g50310 STP9 (SUGAR TRANSPORTER 9) O.I. H.G. S.X.
0.40 51.1 0.95 Os08g0215200 AK072536.1 - En/Spm-like transposon proteins family protein 1e-1 At1g10950 endomembrane protein 70, putative O.I. H.G. S.X.
0.40 51.1 0.95 Os04g0349600 AK070947.1 - TPR-like domain containing protein 2e-2 At3g19160 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) O.I. H.G. S.X.
0.32 36.3 0.94 Os04g0466100 AK064543.1 - Cell division protein FtsH-like protein 3e-7 At3g02450 cell division protein ftsH, putative O.I. H.G. S.X.
0.13 8.2 0.95 Os01g0680700 AK120014.1 - Conserved hypothetical protein 8e-2 At4g21720 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.0 99.1 GSM304669 Control for the stable mutant rice line (1) GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM304664 Control for the stable mutant rice line GSE12069 Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertion
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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