Co-expression analysis

Gene ID	HgAffx.4022.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g08691: unknown protein (HF=8e+0)
Module size	6 genes
NF	0.03
%ile	13.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.81	HgAffx.4022.1.A1_at	CK348668	-	-	8e+0	At4g08691	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.93	HgAffx.16903.1.S1_at	CB279453	-	-	1e+0	At4g12880	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	GmaAffx.89500.1.A1_at	CK605776	-	-	1e+1	At5g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.96	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.95	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.95	GmaAffx.99.2.A1_s_at	BE330213	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.1	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.0	98.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.2	96.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, HV08B14u_at, orthologous to the query gene, HgAffx.4022.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	95.7	HV08B14u_at	At4g08691	-	-	2e+0	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.40	53.1	HV09L12u_at	At4g08691	-	-	4e+0	At2g29870	major intrinsic family protein / MIP family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	baak1e23_at	At4g08691	-	-	4e+0	At4g29103	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig8013_at	At4g08691	-	-	4e-12	At1g54390	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.27	32.1	S0001000015E02F1_at	At4g08691	-	-	1e+1	At3g06700	60S ribosomal protein L29 (RPL29A)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig21310_at	At4g08691	-	-	1e-1	At5g24250	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig20716_at	At4g08691	-	-	3e-1	At2g36450	HRD (HARDY)	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig17645_at	At4g08691	-	-	2e+0	At3g56810	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	HW01F21u_at	At4g08691	-	-	6e+0	At1g07901	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	rbaal17m22_at	At4g08691	-	-	3e-1	At5g28615	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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