Co-expression analysis

Gene ID HgAffx.3578.1.S1_at
Gene name
Homology with ArabidopsisSimilar to Atcg01040: - (HF=2e+0)
Module size 6 genes
NF 0.06
%ile 19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.84HgAffx.3578.1.S1_atAF469059.1--2e+0Atcg01040-O.I.H.G.S.X.
0.4057.10.94PsAffx.C59000014_atPsAffx.C59000014--1e-1At5g53910(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.2329.90.92PsAffx.psZG005xN22f_s_atPsAffx.psZG005xN22f--9e+0At5g14602unknown proteinO.I.H.G.S.X.
0.1114.20.94HgAffx.13668.1.S1_atCB374314--6e-1At5g49710unknown proteinO.I.H.G.S.X.
0.035.80.93GmaAffx.2851.1.S1_atAW507525--1e-5At5g58930unknown proteinO.I.H.G.S.X.
0.013.40.95HgAffx.17965.1.S1_atCB278425--2e+0At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.099.4GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
6.298.6GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
6.098.5GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.698.3GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.998.0GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
4.998.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM29319577_1130.1O.R082P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM2921985_C008.1A.V7A2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM24481318_VP9.I5U4.CEL, Experimental replicate 4GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.2923.1.A1_at, orthologous to the query gene, HgAffx.3578.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4658.4Zm.2923.1.A1_atAtcg01040--2e-6At3g62890bindingO.I.H.G.S.X.
0.7188.2Zm.4666.1.A1_atAtcg01040LSM7-like-2e+0At5g23290PDF5 (PREFOLDIN 5)O.I.H.G.S.X.
0.7188.2Zm.5810.1.A1_atAtcg01040pop3 peptide-5e-4At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.6179.5Zm.4664.3.S1_x_atAtcg01040--4e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.5976.1Zm.4406.2.A1_atAtcg01040--8e-4At1g34790TT1 (transparent testa 1)O.I.H.G.S.X.
0.5369.1Zm.3136.1.A1_atAtcg01040hypothetical protein LOC100192461-9e-66At4g13930SHM4 (serine hydroxymethyltransferase 4)O.I.H.G.S.X.
0.5065.7Zm.1973.1.S1_atAtcg01040hypothetical protein LOC100217077-5e-5At1g12680PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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