Co-expression analysis

Gene ID	HgAffx.3578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg01040: - (HF=2e+0)
Module size	6 genes
NF	0.06
%ile	19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.84	HgAffx.3578.1.S1_at	AF469059.1	-	-	2e+0	Atcg01040	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.94	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.92	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.94	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.93	GmaAffx.2851.1.S1_at	AW507525	-	-	1e-5	At5g58930	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.95	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.4	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.9	98.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the grape gene, 1608861_at, orthologous to the query gene, HgAffx.3578.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1608861_at	Atcg01040	-	-	2e-1	At5g41530	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	1621962_at	Atcg01040	hypothetical protein LOC100249521	-	4e-7	At3g02900	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1622335_s_at	Atcg01040	-	-	2e-1	At5g19340	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1613307_at	Atcg01040	hypothetical protein LOC100257958	-	7e+0	At5g43750	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1610699_at	Atcg01040	hypothetical protein LOC100245228	-	3e-1	At2g41440	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608273_at	Atcg01040	hypothetical protein LOC100249410	-	2e-21	At1g70610	ATTAP1	O.I.	H.G.	S.X.	Please select
0.27	34.0	1608281_at	Atcg01040	hypothetical protein LOC100252990	-	1e+0	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1620538_at	Atcg01040	hypothetical protein LOC100260957	-	4e+0	At4g21590	ENDO3 (endonuclease 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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