Co-expression analysis

Gene ID	HgAffx.3578.1.S1_at
Gene name
Homology with Arabidopsis	Similar to Atcg01040: - (HF=2e+0)
Module size	6 genes
NF	0.06
%ile	19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.84	HgAffx.3578.1.S1_at	AF469059.1	-	-	2e+0	Atcg01040	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.94	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.92	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.94	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.93	GmaAffx.2851.1.S1_at	AW507525	-	-	1e-5	At5g58930	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.95	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	99.4	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.9	98.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.3430.2.S1_a_at, orthologous to the query gene, HgAffx.3578.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	PtpAffx.3430.2.S1_a_at	Atcg01040	-	-	3e-1	At3g24170	ATGR1 (glutathione-disulfide reductase)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	PtpAffx.95985.1.A1_at	Atcg01040	-	-	5e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	PtpAffx.139172.1.S1_at	Atcg01040	hypothetical protein	-	2e-5	At3g59690	IQD13 (IQ-domain 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.5733.1.S1_at	Atcg01040	-	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.21710.1.S1_x_at	Atcg01040	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	PtpAffx.137618.1.S1_at	Atcg01040	hypothetical protein	-	4e-3	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.5733.1.S1_s_at	Atcg01040	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.119923.1.S1_s_at	Atcg01040	vacuolar H+-translocating inorganic pyrophosphatase /// vacuolar H+-translocating inorganic pyrophosphatase	-	2e-113	At1g15690	AVP1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.692.30.A1_at	Atcg01040	-	-	3e-8	At1g19397	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.141227.1.A1_s_at	Atcg01040	hypothetical protein	-	6e-19	At5g48520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.6423.1.S1_s_at	Atcg01040	hypothetical protein /// mitochondrial beta subunit of F1 ATP synthase	-	0	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.204724.1.S1_x_at	Atcg01040	hypothetical protein	-	8e-22	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.1492.1.S1_s_at	Atcg01040	hypothetical protein	-	4e-33	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.514.1.A1_s_at	Atcg01040	hypothetical protein	-	2e-18	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.8000.1.S1_at	Atcg01040	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.249.859.A1_at	Atcg01040	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.5430.3.S1_a_at	Atcg01040	hypothetical protein	-	1e-112	At1g19910	AVA-P2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.2025.2.A1_at	Atcg01040	hypothetical protein	-	2e-27	At4g33910	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.123845.1.S1_s_at	Atcg01040	hypothetical protein	-	2e-21	At4g02500	XT2 (UDP-XYLOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.219972.1.S1_at	Atcg01040	hypothetical protein	-	1e-38	At5g47490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.213002.1.S1_at	Atcg01040	-	-	2e-28	At4g19900	glycosyl transferase-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.214211.1.S1_at	Atcg01040	hypothetical protein	-	3e-37	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.249.85.A1_s_at	Atcg01040	-	-	1e-85	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.659.1.S1_s_at	Atcg01040	hypothetical protein	-	5e-14	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.205716.1.S1_at	Atcg01040	hypothetical protein	-	2e-13	At3g63330	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.1439.1.S1_x_at	Atcg01040	hypothetical protein	-	3e-1	At3g06120	MUTE (MUTE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.215989.1.S1_at	Atcg01040	hypothetical protein	-	1e-7	At3g05380	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.67146.1.S1_at	Atcg01040	hypothetical protein	-	1e-30	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.663.1.S1_x_at	Atcg01040	hypothetical protein	-	1e-90	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.454.1.A1_a_at	Atcg01040	-	-	6e-4	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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