Co-expression analysis

Gene ID HgAffx.3169.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g31240: DNA binding (HF=5e-2)
Module size 7 genes
NF 0.17
%ile 39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3243.70.63HgAffx.3169.1.A1_atCK350045--5e-2At1g31240DNA bindingO.I.H.G.S.X.
0.3650.80.72PsAffx.C101000042_atPsAffx.C101000042--3e+0At5g08150unknown proteinO.I.H.G.S.X.
0.2430.90.72GmaAffx.61422.1.A1_atCD397768--1e+1At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)O.I.H.G.S.X.
0.2329.90.69PsAffx.C7000054_atPsAffx.C7000054--6e-1At3g60420-O.I.H.G.S.X.
0.2228.10.70HgAffx.3402.1.A1_atCK349288--3e+0At1g23420INO (INNER NO OUTER)O.I.H.G.S.X.
0.1114.20.74PsAffx.C68000072_atPsAffx.C68000072--4e+0At2g41410calmodulin, putativeO.I.H.G.S.X.
0.0710.20.72GmaAffx.55284.1.S1_atBM108343--3e+0At5g10390histone H3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.599.9GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
14.499.6GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM147945Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.396.2GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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