Co-expression analysis

Gene ID	HgAffx.3013.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g66890: - (HF=3e-1)
Module size	6 genes
NF	0.72
%ile	96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.84	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	O.I.	H.G.	S.X.	Please select
0.83	92.5	0.86	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.84	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.86	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.88	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.84	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
46.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.8721.1.A1_at, orthologous to the query gene, HgAffx.3013.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	Zm.8721.1.A1_at	At1g66890	catalytic/ oxidoreductase, acting on NADH or NADPH	-	3e-1	At1g10530	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.12740.1.S1_at	At1g66890	hypothetical protein LOC100194228	-	4e-12	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.1274.1.S1_at	At1g66890	hypothetical protein LOC100272786	-	7e-1	At2g38550	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.5121.1.S1_at	At1g66890	-	-	2e+0	At2g15570	thioredoxin M-type 3, chloroplast (TRX-M3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.4084.1.A1_at	At1g66890	CONSTANS interacting protein 6	-	8e-1	At5g28800	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	ZmAffx.706.1.A1_at	At1g66890	-	-	8e-1	At1g23590	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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