Co-expression analysis

Gene ID HgAffx.3013.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g66890: - (HF=3e-1)
Module size 6 genes
NF 0.72
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.84HgAffx.3013.1.S1_atCK349173--3e-1At1g66890-O.I.H.G.S.X.
0.8392.50.86PsAffx.C6000193_atPsAffx.C6000193--1e+1Atmg00450-O.I.H.G.S.X.
0.7187.80.84PsAffx.C115000050_s_atPsAffx.C115000050--2e+0At5g66490unknown proteinO.I.H.G.S.X.
0.6786.10.86HgAffx.11003.1.S1_atCB824101--4e+0At3g28630-O.I.H.G.S.X.
0.6786.10.88HgAffx.5776.1.S1_atCB826435--1e+0At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.4463.30.84PsAffx.C47000085_atPsAffx.C47000085--2e+0At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.699.9GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.297.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.220544.1.S1_at, orthologous to the query gene, HgAffx.3013.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5279.4PtpAffx.220544.1.S1_atAt1g66890hypothetical protein-9e-2At2g23310ATRER1C1O.I.H.G.S.X.
0.3255.2PtpAffx.223884.1.S1_x_atAt1g66890hypothetical protein-2e-1At2g16575unknown proteinO.I.H.G.S.X.
0.3153.7PtpAffx.215698.1.S1_x_atAt1g66890hypothetical protein-6e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.3153.7PtpAffx.220414.1.S1_atAt1g66890hypothetical protein-2e+1At4g25550protein bindingO.I.H.G.S.X.
0.2950.5PtpAffx.127631.1.A1_atAt1g66890bile acid:Na+ symporter family protein-2e+0At3g48590NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)O.I.H.G.S.X.
0.2645.2PtpAffx.108514.1.A1_atAt1g66890--5e-1At5g15390tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.2645.2PtpAffx.218450.1.S1_s_atAt1g66890hypothetical protein-6e+0At5g66190FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)O.I.H.G.S.X.
0.2543.6PtpAffx.40862.1.S1_atAt1g66890--7e-2At1g27300unknown proteinO.I.H.G.S.X.
0.2136.5PtpAffx.202836.1.S1_x_atAt1g66890hypothetical protein-4e+0At5g40930TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)O.I.H.G.S.X.
0.2034.6PtpAffx.21476.1.S1_atAt1g66890hypothetical protein-6e-2At2g22570NIC1 (NICOTINAMIDASE 1)O.I.H.G.S.X.
0.1830.8PtpAffx.249.292.A1_atAt1g66890hypothetical protein-3e-2At2g47400CP12-1O.I.H.G.S.X.
0.1525.3PtpAffx.220532.1.S1_atAt1g66890hypothetical protein-4e-1At4g00310EDA8 (EMBRYO SAC DEVELOPMENT ARREST 8)O.I.H.G.S.X.
0.1118.1Ptp.1358.2.A1_atAt1g66890--2e+0At1g67740PSBYO.I.H.G.S.X.
0.1016.3PtpAffx.107969.2.A1_atAt1g66890--2e-2At5g66680DGL1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage