Co-expression analysis

Gene ID HgAffx.3013.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g66890: - (HF=3e-1)
Module size 6 genes
NF 0.72
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.84HgAffx.3013.1.S1_atCK349173--3e-1At1g66890-O.I.H.G.S.X.
0.8392.50.86PsAffx.C6000193_atPsAffx.C6000193--1e+1Atmg00450-O.I.H.G.S.X.
0.7187.80.84PsAffx.C115000050_s_atPsAffx.C115000050--2e+0At5g66490unknown proteinO.I.H.G.S.X.
0.6786.10.86HgAffx.11003.1.S1_atCB824101--4e+0At3g28630-O.I.H.G.S.X.
0.6786.10.88HgAffx.5776.1.S1_atCB826435--1e+0At5g59030COPT1 (copper transporter 1)O.I.H.G.S.X.
0.4463.30.84PsAffx.C47000085_atPsAffx.C47000085--2e+0At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
46.699.9GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
4.297.4GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29308281_C019.1N.R9N1U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0439200, orthologous to the query gene, HgAffx.3013.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.6Os05g0439200At1g66890-Hypothetical protein6e+0At1g50350-O.I.H.G.S.X.
0.8094.6Os01g0320700At1g66890-Hypothetical protein1e+0At5g13340unknown proteinO.I.H.G.S.X.
0.8094.6Os07g0255300At1g66890-Conserved hypothetical protein3e+0At5g60460sec61beta family proteinO.I.H.G.S.X.
0.4253.9Os03g0722200At1g66890-Hypothetical protein2e-2At1g62240unknown proteinO.I.H.G.S.X.
0.3541.7Os08g0491600At1g66890--1e+0At4g13800permease-relatedO.I.H.G.S.X.
0.2117.9Os01g0710800At1g66890-Hypothetical protein4e-1At1g13080CYP71B2 (CYTOCHROME P450 71B2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage