Co-expression analysis

Gene ID HgAffx.24327.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g46910: ubiquitin protein ligase binding (HF=2e-1)
Module size 37 genes
NF 0.33
%ile 60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.99100.00.84HgAffx.24327.1.S1_atBF013522--2e-1At3g46910ubiquitin protein ligase bindingO.I.H.G.S.X.
0.6886.40.93HgAffx.18353.1.S1_atCD748145--1e+0At5g50915basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6080.70.92GmaAffx.90742.1.S1_x_atCF806467--2e-14At5g4643060S ribosomal protein L32 (RPL32B)O.I.H.G.S.X.
0.5979.50.93PsAffx.psHB012xG08f_atPsAffx.psHB012xG08f--2e-1At1g53580GLY3 (GLYOXALASE II 3)O.I.H.G.S.X.
0.5979.50.93PsAffx.C20000118_s_atPsAffx.C20000118--6e-2At3g56440AtATG18dO.I.H.G.S.X.
0.5778.80.93GmaAffx.62085.1.A1_atAW348483--9e+0At4g14420lesion inducing protein-relatedO.I.H.G.S.X.
0.5576.30.93HgAffx.19746.1.S1_atCD748943--2e+0At2g44745WRKY family transcription factorO.I.H.G.S.X.
0.5576.30.93GmaAffx.62125.1.S1_atAW395593--2e-1At5g64770unknown proteinO.I.H.G.S.X.
0.5474.80.93HgAffx.11255.1.S1_atCB935195--5e+0At3g09050unknown proteinO.I.H.G.S.X.
0.5374.20.95GmaAffx.15790.1.A1_atCD405768--2e+0At1g70790C2 domain-containing proteinO.I.H.G.S.X.
0.4968.30.93HgAffx.18703.1.S1_atCA940477--4e+0At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.4968.30.93GmaAffx.28541.1.S1_atBQ080303--3e+0At5g43980PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)O.I.H.G.S.X.
0.4766.60.93HgAffx.1675.1.S1_atCK351015--2e+0At2g32550rcd1-like cell differentiation family proteinO.I.H.G.S.X.
0.4766.60.94HgAffx.15698.1.S1_atCB281296--4e+0At2g26670TED4 (REVERSAL OF THE DET PHENOTYPE 4)O.I.H.G.S.X.
0.4463.30.95PsAffx.psHB004xH08f_atPsAffx.psHB004xH08f--5e+0At3g61840unknown proteinO.I.H.G.S.X.
0.4463.30.93HgAffx.16208.1.S1_atCB935526--5e+0At5g55750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4259.30.93GmaAffx.25527.1.S1_atBM525182--3e+0At4g38800ATMTN1O.I.H.G.S.X.
0.4158.10.94HgAffx.18050.1.S1_atCB238644--3e+0At5g42504unknown proteinO.I.H.G.S.X.
0.3954.50.94PsAffx.C34000064_atPsAffx.C34000064--2e+0At5g29560calcium ion bindingO.I.H.G.S.X.
0.3954.50.94PsAffx.C122000010_atPsAffx.C122000010--6e-1At4g16240unknown proteinO.I.H.G.S.X.
0.3650.80.94GmaAffx.14280.1.S1_atBM095066--1e-8At1g22710SUC2 (SUCROSE-PROTON SYMPORTER 2)O.I.H.G.S.X.
0.3447.20.94GmaAffx.31414.1.A1_atBI786718--3e-1At5g03990unknown proteinO.I.H.G.S.X.
0.3447.20.94PsAffx.C217000001_atPsAffx.C217000001--6e-1At1g27350-O.I.H.G.S.X.
0.3447.20.93GmaAffx.93594.1.S1_atCF809319--6e-46At1g16680DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putativeO.I.H.G.S.X.
0.3447.20.94PsAffx.C7000016_atPsAffx.C7000016--3e+0At4g26920-O.I.H.G.S.X.
0.3243.70.94PsAffx.C225000015_atPsAffx.C225000015--5e-2At1g15200protein-protein interaction regulator family proteinO.I.H.G.S.X.
0.3142.20.94GmaAffx.14602.1.S1_atBM731566--2e-1At3g45851unknown proteinO.I.H.G.S.X.
0.2939.00.95HgAffx.19033.4.A1_x_atCK350593--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2735.70.95HgAffx.19033.4.A1_atCK350593--6e-2At1g54410dehydrin family proteinO.I.H.G.S.X.
0.2532.60.95GmaAffx.93289.1.S1_atCF809014--2e-33At3g26370unknown proteinO.I.H.G.S.X.
0.1923.70.96HgAffx.17965.1.S1_atCB278425--2e+0At2g23340AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.1417.50.98GmaAffx.5376.1.S1_s_atBI321591--2e-12At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.1417.50.98GmaAffx.90323.1.A1_s_atCF806048--4e-7At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.1417.50.98GmaAffx.89861.1.S1_s_atCK606562Ubiquitin-3e-127At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.1417.50.98Gma.2534.1.S1_s_atBI967545Ubiquitin-2e-140At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.1114.20.95GmaAffx.61457.1.A1_atCD405281--1e-2At3g13500unknown proteinO.I.H.G.S.X.
0.024.50.95Gma.2711.1.S1_a_atBU545471--1e-15At5g11170ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.397.5GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
3.897.0GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.496.4GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.496.4GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.496.4GSM29443186_2456.2J.R220P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM201106Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM191084Soybean_Cotyledon_EPD2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM191086Soybean_Cotyledon_HI2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.296.0GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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