Co-expression analysis

Gene ID	HgAffx.24327.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g46910: ubiquitin protein ligase binding (HF=2e-1)
Module size	37 genes
NF	0.33
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.99	100.0	0.84	HgAffx.24327.1.S1_at	BF013522	-	-	2e-1	At3g46910	ubiquitin protein ligase binding	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.93	HgAffx.18353.1.S1_at	CD748145	-	-	1e+0	At5g50915	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.92	GmaAffx.90742.1.S1_x_at	CF806467	-	-	2e-14	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.93	PsAffx.psHB012xG08f_at	PsAffx.psHB012xG08f	-	-	2e-1	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.93	PsAffx.C20000118_s_at	PsAffx.C20000118	-	-	6e-2	At3g56440	AtATG18d	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.93	GmaAffx.62085.1.A1_at	AW348483	-	-	9e+0	At4g14420	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.93	HgAffx.19746.1.S1_at	CD748943	-	-	2e+0	At2g44745	WRKY family transcription factor	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.93	GmaAffx.62125.1.S1_at	AW395593	-	-	2e-1	At5g64770	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.93	HgAffx.11255.1.S1_at	CB935195	-	-	5e+0	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.95	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.93	HgAffx.18703.1.S1_at	CA940477	-	-	4e+0	At5g56710	60S ribosomal protein L31 (RPL31C)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.93	GmaAffx.28541.1.S1_at	BQ080303	-	-	3e+0	At5g43980	PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.93	HgAffx.1675.1.S1_at	CK351015	-	-	2e+0	At2g32550	rcd1-like cell differentiation family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.94	HgAffx.15698.1.S1_at	CB281296	-	-	4e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.95	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.93	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.93	GmaAffx.25527.1.S1_at	BM525182	-	-	3e+0	At4g38800	ATMTN1	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.94	HgAffx.18050.1.S1_at	CB238644	-	-	3e+0	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.94	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.94	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.94	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.94	GmaAffx.31414.1.A1_at	BI786718	-	-	3e-1	At5g03990	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.94	PsAffx.C217000001_at	PsAffx.C217000001	-	-	6e-1	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.93	GmaAffx.93594.1.S1_at	CF809319	-	-	6e-46	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.94	PsAffx.C7000016_at	PsAffx.C7000016	-	-	3e+0	At4g26920	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	PsAffx.C225000015_at	PsAffx.C225000015	-	-	5e-2	At1g15200	protein-protein interaction regulator family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.94	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.95	HgAffx.19033.4.A1_x_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.95	GmaAffx.93289.1.S1_at	CF809014	-	-	2e-33	At3g26370	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.96	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	GmaAffx.5376.1.S1_s_at	BI321591	-	-	2e-12	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	GmaAffx.90323.1.A1_s_at	CF806048	-	-	4e-7	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	GmaAffx.89861.1.S1_s_at	CK606562	Ubiquitin	-	3e-127	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.98	Gma.2534.1.S1_s_at	BI967545	Ubiquitin	-	2e-140	At4g05320	UBQ10 (POLYUBIQUITIN 10)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.95	GmaAffx.61457.1.A1_at	CD405281	-	-	1e-2	At3g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.95	Gma.2711.1.S1_a_at	BU545471	-	-	1e-15	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.8	97.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.4	96.4	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM294431	86_2456.2J.R220P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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