Co-expression analysis

Gene ID HgAffx.16785.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g17440: unknown protein (HF=6e-2)
Module size 6 genes
NF 0.13
%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.73HgAffx.16785.1.S1_atCB375766--6e-2At4g17440unknown proteinO.I.H.G.S.X.
0.3548.60.94PsAffx.C59000014_atPsAffx.C59000014--1e-1At5g53910(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.2735.70.94PsAffx.C123000031_atPsAffx.C123000031--2e+0At4g22930PYR4 (PYRIMIDIN 4)O.I.H.G.S.X.
0.0912.00.94PsAffx.C162000008_atPsAffx.C162000008--8e-2At5g08160ATPK3O.I.H.G.S.X.
0.0710.20.94HgAffx.3203.1.A1_atCK350831--3e+0At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.058.00.94GmaAffx.14602.1.S1_atBM731566--2e-1At3g45851unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.299.5GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
5.198.1GSM308556Mature Soybean (Glycine max) pollen grains replicate 1GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) PollenLink to GEO
4.197.3GSM29426823_2428.2I.R297P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.897.0GSM29283818_C211.1L.SLL3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM29244849_C110.1G.V7G1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0388700, orthologous to the query gene, HgAffx.16785.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.7Os08g0388700At4g17440--6e-2At1g78410VQ motif-containing proteinO.I.H.G.S.X.
0.6181.2Os05g0477800At4g17440-High-affinity sulfate transporter HvST13e+0At1g21190small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.4863.7Os03g0178800At4g17440-Conserved hypothetical protein3e+0At5g55170SUMO3 (SMALL UBIQUITIN-LIKE MODIFIER 3)O.I.H.G.S.X.
0.4660.9Os04g0324000At4g17440--3e-12At1g78270AtUGT85A4 (UDP-glucosyl transferase 85A4)O.I.H.G.S.X.
0.2931.1Os12g0486800At4g17440-Conserved hypothetical protein1e+0At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.2524.1Os01g0238400At4g17440-Hypothetical protein5e+0At4g08230glycine-rich proteinO.I.H.G.S.X.
0.1813.7Os01g0860700At4g17440-Hypothetical protein3e+0At3g46560TIM9O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage