Co-expression analysis

Gene ID	HgAffx.16785.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g17440: unknown protein (HF=6e-2)
Module size	6 genes
NF	0.13
%ile	32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.73	HgAffx.16785.1.S1_at	CB375766	-	-	6e-2	At4g17440	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.94	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.94	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	O.I.	H.G.	S.X.	Please select
0.09	12.0	0.94	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.94	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.94	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	99.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, HVSMEn0015O13r2_at, orthologous to the query gene, HgAffx.16785.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HVSMEn0015O13r2_at	At4g17440	-	-	1e+0	At4g29470	phospholipase A2, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	HVSMEa0011G17r2_x_at	At4g17440	-	-	4e+0	At1g26665	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig16887_at	At4g17440	-	-	4e-4	At5g63970	copine-related	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig5407_at	At4g17440	-	-	1e+0	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	HU08P15u_s_at	At4g17440	-	-	3e+0	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig4426_at	At4g17440	-	-	9e-7	At3g28200	peroxidase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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