Co-expression analysis

Gene ID	HgAffx.16448.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g37410: ATTIM17-2 (HF=4e+0)
Module size	6 genes
NF	0.01
%ile	8.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.69	HgAffx.16448.1.S1_at	CB279909	-	-	4e+0	At2g37410	ATTIM17-2	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	GmaAffx.25527.1.S1_at	BM525182	-	-	3e+0	At4g38800	ATMTN1	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.94	GmaAffx.64262.1.A1_at	BI969154	-	-	7e-1	At1g07450	tropinone reductase, putative / tropine dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.95	GmaAffx.93289.1.S1_at	CF809014	-	-	2e-33	At3g26370	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.94	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
-	1.4	0.93	GmaAffx.90362.1.A1_at	CF806087	-	-	4e-28	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.3	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.6	97.7	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.5	97.7	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.5	97.7	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
4.4	97.6	GSM147951	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.4	97.6	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.3	97.5	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.2	97.4	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.1	97.3	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.1	97.3	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.0	97.2	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
4.0	97.2	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9	97.1	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.9	97.1	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.9	97.1	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM147942	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.8	97.0	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.8	97.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM201121	Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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