Co-expression analysis

Gene ID	HgAffx.16176.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g60540: sec61beta family protein (HF=4e+0)
Module size	18 genes
NF	0.38
%ile	67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.4	0.93	HgAffx.16176.1.S1_at	CB375617	-	-	4e+0	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.94	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.94	PsAffx.C162000008_at	PsAffx.C162000008	-	-	8e-2	At5g08160	ATPK3	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.94	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.94	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.95	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.94	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.94	HgAffx.15698.1.S1_at	CB281296	-	-	4e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	PsAffx.C122000010_at	PsAffx.C122000010	-	-	6e-1	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.95	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.94	GmaAffx.1910.1.S1_at	BU761686	-	-	2e-1	At5g25980	TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.94	HgAffx.14720.1.A1_at	CK350926	-	-	2e-1	At1g66360	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.95	GmaAffx.15790.1.A1_at	CD405768	-	-	2e+0	At1g70790	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.94	HgAffx.18004.1.S1_at	CB279764	-	-	2e+0	At4g13000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.96	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.94	HgAffx.3224.1.S1_at	CK350578	-	-	7e+0	At2g35760	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.96	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	99.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.8	97.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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